Human Gene NME2 (ENST00000514264.6) from GENCODE V44
  Description: Homo sapiens NME/NM23 nucleoside diphosphate kinase 2 (NME2), transcript variant 2, mRNA. (from RefSeq NM_001018137)
RefSeq Summary (NM_001018137): Nucleoside diphosphate kinase (NDK) exists as a hexamer composed of 'A' (encoded by NME1) and 'B' (encoded by this gene) isoforms. Multiple alternatively spliced transcript variants have been found for this gene. Read-through transcription from the neighboring upstream gene (NME1) generates naturally-occurring transcripts (NME1-NME2) that encode a fusion protein comprised of sequence sharing identity with each individual gene product. [provided by RefSeq, Nov 2010].
Gencode Transcript: ENST00000514264.6
Gencode Gene: ENSG00000243678.12
Transcript (Including UTRs)
   Position: hg38 chr17:51,165,435-51,171,744 Size: 6,310 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr17:51,166,831-51,171,604 Size: 4,774 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:51,165,435-51,171,744)mRNA (may differ from genome)Protein (152 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: Q6FHN3_HUMAN
DESCRIPTION: RecName: Full=Nucleoside diphosphate kinase; EC=2.7.4.6;
CATALYTIC ACTIVITY: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.
SIMILARITY: Belongs to the NDK family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NME2
Diseases sorted by gene-association score: myxosarcoma (1), lung sarcoma (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.45 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 205.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -94.30251-0.376 Picture PostScript Text
3' UTR -34.50140-0.246 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001564 - Nucleoside_diP_kinase
IPR023005 - Nucleoside_diP_kinase_AS

Pfam Domains:
PF00334 - Nucleoside diphosphate kinase

ModBase Predicted Comparative 3D Structure on Q6FHN3
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004550 nucleoside diphosphate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006165 nucleoside diphosphate phosphorylation
GO:0006183 GTP biosynthetic process
GO:0006228 UTP biosynthetic process
GO:0006241 CTP biosynthetic process
GO:0016310 phosphorylation


-  Descriptions from all associated GenBank mRNAs
  AK313448 - Homo sapiens cDNA, FLJ93990, Homo sapiens non-metastatic cells 2, protein (NM23B) expressed in(NME2), mRNA.
DQ109675 - Homo sapiens NM23-LV mRNA, complete cds.
BC133029 - Homo sapiens NME1-NME2 readthrough transcript, mRNA (cDNA clone MGC:164660 IMAGE:40147051), complete cds.
BC133031 - Homo sapiens NME1-NME2 readthrough transcript, mRNA (cDNA clone MGC:164662 IMAGE:40147053), complete cds.
BC107894 - Homo sapiens NME1-NME2 readthrough transcript, mRNA (cDNA clone MGC:111212 IMAGE:6717551), complete cds.
KJ901269 - Synthetic construct Homo sapiens clone ccsbBroadEn_10663 NME1-NME2 gene, encodes complete protein.
M36981 - Human putative NDP kinase (nm23-H2S) mRNA, complete cds.
X58965 - H.sapiens RNA for nm23-H2 gene.
BC095458 - Homo sapiens non-metastatic cells 2, protein (NM23B) expressed in, mRNA (cDNA clone MGC:111348 IMAGE:30524221), complete cds.
EU794639 - Homo sapiens epididymis secretory sperm binding protein Li 155an (HEL-S-155an) mRNA, complete cds.
L16785 - Homo sapiens c-myc transcription factor (puf) mRNA, complete cds.
BC002476 - Homo sapiens non-metastatic cells 2, protein (NM23B) expressed in, mRNA (cDNA clone MGC:2212 IMAGE:3349768), complete cds.
BT007045 - Homo sapiens non-metastatic cells 2, protein (NM23B) expressed in mRNA, complete cds.
CR541718 - Homo sapiens full open reading frame cDNA clone RZPDo834B0629D for gene NME2, non-metastatic cells 2, protein (NM23B) expressed in; complete cds, incl. stopcodon.
JD023160 - Sequence 4184 from Patent EP1572962.
JD033589 - Sequence 14613 from Patent EP1572962.
FJ655905 - Homo sapiens RPL27-NME2 fusion mRNA, partial sequence.
DL490559 - Novel nucleic acids.
JD027157 - Sequence 8181 from Patent EP1572962.
JD024122 - Sequence 5146 from Patent EP1572962.
JD030914 - Sequence 11938 from Patent EP1572962.
JD148163 - Sequence 129187 from Patent EP1572962.
JD524167 - Sequence 505191 from Patent EP1572962.
JD547287 - Sequence 528311 from Patent EP1572962.
JD050537 - Sequence 31561 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00230 - Purine metabolism
hsa00240 - Pyrimidine metabolism
hsa01100 - Metabolic pathways

BioCarta from NCI Cancer Genome Anatomy Project
h_ndkDynaminPathway - Endocytotic role of NDK, Phosphins and Dynamin

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000514264.1, ENST00000514264.2, ENST00000514264.3, ENST00000514264.4, ENST00000514264.5, hCG_2001850, NM_001018137, Q6FHN3, Q6FHN3_HUMAN, uc002itl.1, uc002itl.2, uc002itl.3
UCSC ID: ENST00000514264.6
RefSeq Accession: NM_001018137
Protein: Q6FHN3 CCDS: CCDS11580.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.