Human Gene TXNDC2 (ENST00000357775.6) from GENCODE V44
  Description: Homo sapiens thioredoxin domain containing 2 (TXNDC2), transcript variant 1, mRNA. (from RefSeq NM_032243)
Gencode Transcript: ENST00000357775.6
Gencode Gene: ENSG00000168454.13
Transcript (Including UTRs)
   Position: hg38 chr18:9,885,973-9,889,275 Size: 3,303 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg38 chr18:9,886,681-9,888,141 Size: 1,461 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:9,885,973-9,889,275)mRNA (may differ from genome)Protein (486 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TXND2_HUMAN
DESCRIPTION: RecName: Full=Thioredoxin domain-containing protein 2; AltName: Full=Spermatid-specific thioredoxin-1; Short=Sptrx-1;
FUNCTION: Probably plays a regulatory role in sperm development. May participate in regulation of fibrous sheath (FS) assembly by supporting the formation of disulfide bonds during sperm tail morphogenesis. May also be required to rectify incorrect disulfide pairing and generate suitable pairs between the FS constituents. Can reduce disulfide bonds in vitro in the presence of NADP and thioredoxin reductase.
SUBCELLULAR LOCATION: Cytoplasm. Note=In ejaculated spermatozoa, it localizes in the caudal region of the head to the end of the principal piece.
TISSUE SPECIFICITY: Testis-specific. Only expressed during spermiogenesis, prominently in round and elongating spermatids.
SIMILARITY: Contains 1 thioredoxin domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 65.21 RPKM in Testis
Total median expression: 66.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.80200-0.259 Picture PostScript Text
3' UTR -273.501134-0.241 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001419 - Glutenin
IPR005746 - Thioredoxin
IPR012336 - Thioredoxin-like_fold
IPR013766 - Thioredoxin_domain

Pfam Domains:
PF03157 - High molecular weight glutenin subunit
PF00085 - Thioredoxin

ModBase Predicted Comparative 3D Structure on Q86VQ3
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004791 thioredoxin-disulfide reductase activity
GO:0015035 protein disulfide oxidoreductase activity
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0047134 protein-disulfide reductase activity

Biological Process:
GO:0006662 glycerol ether metabolic process
GO:0007275 multicellular organism development
GO:0007283 spermatogenesis
GO:0030154 cell differentiation
GO:0034599 cellular response to oxidative stress
GO:0045454 cell redox homeostasis
GO:0055114 oxidation-reduction process
GO:0098869 cellular oxidant detoxification

Cellular Component:
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK303045 - Homo sapiens cDNA FLJ61503 complete cds, moderately similar to Thioredoxin domain-containing protein 2.
BC050132 - Homo sapiens thioredoxin domain containing 2 (spermatozoa), mRNA (cDNA clone MGC:35026 IMAGE:5164861), complete cds.
JD523892 - Sequence 504916 from Patent EP1572962.
AK097656 - Homo sapiens cDNA FLJ40337 fis, clone TESTI2032044, moderately similar to THIOREDOXIN.
AF080095 - Homo sapiens sperm-specific thioredoxin (Sptrx) mRNA, complete cds.
EF560747 - Homo sapiens clone IMAGp998K0211411 TXNDC2 protein (TXNDC2) mRNA, complete cds.
HM005528 - Homo sapiens clone HTL-T-215 testicular tissue protein Li 215 mRNA, complete cds.
JD307625 - Sequence 288649 from Patent EP1572962.
JD335455 - Sequence 316479 from Patent EP1572962.
JD062679 - Sequence 43703 from Patent EP1572962.
EU832471 - Synthetic construct Homo sapiens clone HAIB:100067500; DKFZo008C0929 thioredoxin domain-containing 2 (spermatozoa) protein (TXNDC2) gene, encodes complete protein.
EU832550 - Synthetic construct Homo sapiens clone HAIB:100067579; DKFZo004C0930 thioredoxin domain-containing 2 (spermatozoa) protein (TXNDC2) gene, encodes complete protein.
AL136742 - Homo sapiens mRNA; cDNA DKFZp434H0311 (from clone DKFZp434H0311).

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000357775.1, ENST00000357775.2, ENST00000357775.3, ENST00000357775.4, ENST00000357775.5, NM_032243, Q86VQ3, Q8N7U4, Q96RX3, Q9H0L8, SPTRX, SPTRX1, TXND2_HUMAN, uc002koh.1, uc002koh.2, uc002koh.3, uc002koh.4, uc002koh.5, uc002koh.6
UCSC ID: ENST00000357775.6
RefSeq Accession: NM_032243
Protein: Q86VQ3 (aka TXND2_HUMAN)
CCDS: CCDS11846.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.