The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q96N28
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Molecular Function: GO:0005515 protein binding GO:1990050 phosphatidic acid transporter activity
Biological Process: GO:0006869 lipid transport GO:0015914 phospholipid transport
Cellular Component: GO:0005739 mitochondrion GO:0005758 mitochondrial intermembrane space
Descriptions from all associated GenBank mRNAs
KJ893101 - Synthetic construct Homo sapiens clone ccsbBroadEn_02495 SLMO1 gene, encodes complete protein. KJ902141 - Synthetic construct Homo sapiens clone ccsbBroadEn_11535 SLMO1 gene, encodes complete protein. LF385254 - JP 2014500723-A/192757: Polycomb-Associated Non-Coding RNAs. MA620831 - JP 2018138019-A/192757: Polycomb-Associated Non-Coding RNAs. AK056046 - Homo sapiens cDNA FLJ31484 fis, clone NT2NE2001697, weakly similar to MSF1 PROTEIN. BC106750 - Homo sapiens slowmo homolog 1 (Drosophila), mRNA (cDNA clone MGC:120170 IMAGE:40022464), complete cds. AK303325 - Homo sapiens cDNA FLJ57699 complete cds. AL359942 - Homo sapiens mRNA; cDNA DKFZp547K106 (from clone DKFZp547K106). CR627465 - Homo sapiens mRNA; cDNA DKFZp547K106 (from clone DKFZp547K106). JD020250 - Sequence 1274 from Patent EP1572962. JD032172 - Sequence 13196 from Patent EP1572962. JD020818 - Sequence 1842 from Patent EP1572962. BC007528 - Homo sapiens slowmo homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:3346312). JD023265 - Sequence 4289 from Patent EP1572962. JD031010 - Sequence 12034 from Patent EP1572962. JD026397 - Sequence 7421 from Patent EP1572962. JD030484 - Sequence 11508 from Patent EP1572962. JD453914 - Sequence 434938 from Patent EP1572962. AF048849 - Homo sapiens erythroid differentiation and denucleation factor 1 (HFL-EDDG1) mRNA, complete cds. JD131437 - Sequence 112461 from Patent EP1572962. JD376986 - Sequence 358010 from Patent EP1572962. JD424179 - Sequence 405203 from Patent EP1572962. JD198196 - Sequence 179220 from Patent EP1572962. BT007092 - Homo sapiens erythroid differentiation and denucleation factor 1 mRNA, complete cds. JD494754 - Sequence 475778 from Patent EP1572962. JD450235 - Sequence 431259 from Patent EP1572962. JD300166 - Sequence 281190 from Patent EP1572962.
Biochemical and Signaling Pathways
Reactome (by CSHL, EBI, and GO)
Protein Q96N28 (Reactome details) participates in the following event(s):
R-HSA-6801242 TRIAP1 binds PRELID1, PRELID3A R-HSA-6801250 TRIAP1:PRELID1, PRELID3A transports PA from the outer to the inner mitochondrial membrane R-HSA-6803204 TP53 Regulates Transcription of Genes Involved in Cytochrome C Release R-HSA-5633008 TP53 Regulates Transcription of Cell Death Genes R-HSA-3700989 Transcriptional Regulation by TP53 R-HSA-212436 Generic Transcription Pathway R-HSA-73857 RNA Polymerase II Transcription R-HSA-74160 Gene expression (Transcription)
US Server
