Human Gene WDR83OS (ENST00000596731.7) from GENCODE V44
  Description: Homo sapiens WD repeat domain 83 opposite strand (WDR83OS), mRNA. (from RefSeq NM_016145)
Gencode Transcript: ENST00000596731.7
Gencode Gene: ENSG00000105583.11
Transcript (Including UTRs)
   Position: hg38 chr19:12,668,073-12,669,415 Size: 1,343 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg38 chr19:12,668,359-12,669,403 Size: 1,045 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:12,668,073-12,669,415)mRNA (may differ from genome)Protein (106 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ASTER_HUMAN
DESCRIPTION: RecName: Full=Protein Asterix; AltName: Full=WD repeat domain 83 opposite strand; AltName: Full=WDR83 opposite strand;
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential).
SIMILARITY: Belongs to the Asterix family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -91.50286-0.320 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005351 - UPF0139

Pfam Domains:
PF03669 - Uncharacterised protein family (UPF0139)

ModBase Predicted Comparative 3D Structure on Q9Y284
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsemblWormBase 
Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence 
AlignmentAlignmentAlignmentAlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF384415 - JP 2014500723-A/191918: Polycomb-Associated Non-Coding RNAs.
MA619992 - JP 2018138019-A/191918: Polycomb-Associated Non-Coding RNAs.
LF208196 - JP 2014500723-A/15699: Polycomb-Associated Non-Coding RNAs.
MA443773 - JP 2018138019-A/15699: Polycomb-Associated Non-Coding RNAs.
BC001192 - Homo sapiens chromosome 19 open reading frame 56, mRNA (cDNA clone IMAGE:3355084), partial cds.
BC042919 - Homo sapiens chromosome 19 open reading frame 56, mRNA (cDNA clone MGC:52191 IMAGE:5932109), complete cds.
AK091030 - Homo sapiens cDNA FLJ33711 fis, clone BRAWH2008219.
AF059620 - Homo sapiens clone 015e06 My006 protein mRNA, complete cds.
BC061912 - Homo sapiens chromosome 19 open reading frame 56, mRNA (cDNA clone MGC:70730 IMAGE:4444565), complete cds.
AF078861 - Homo sapiens PTD008 mRNA, complete cds.
AF151898 - Homo sapiens CGI-140 protein mRNA, complete cds.
JD426299 - Sequence 407323 from Patent EP1572962.
JD163661 - Sequence 144685 from Patent EP1572962.
JD255199 - Sequence 236223 from Patent EP1572962.
JD416864 - Sequence 397888 from Patent EP1572962.
LF373415 - JP 2014500723-A/180918: Polycomb-Associated Non-Coding RNAs.
MA608992 - JP 2018138019-A/180918: Polycomb-Associated Non-Coding RNAs.
JD126534 - Sequence 107558 from Patent EP1572962.
JD455986 - Sequence 437010 from Patent EP1572962.
JD514598 - Sequence 495622 from Patent EP1572962.
LF373414 - JP 2014500723-A/180917: Polycomb-Associated Non-Coding RNAs.
MA608991 - JP 2018138019-A/180917: Polycomb-Associated Non-Coding RNAs.
JD167556 - Sequence 148580 from Patent EP1572962.
JD202273 - Sequence 183297 from Patent EP1572962.
AK311944 - Homo sapiens cDNA, FLJ92212, Homo sapiens PTD008 protein (PTD008), mRNA.
HQ448572 - Synthetic construct Homo sapiens clone IMAGE:100072010; CCSB012058_01 chromosome 19 open reading frame 56 (C19orf56) gene, encodes complete protein.
KJ893905 - Synthetic construct Homo sapiens clone ccsbBroadEn_03299 WDR83OS gene, encodes complete protein.
JD030331 - Sequence 11355 from Patent EP1572962.
JD025979 - Sequence 7003 from Patent EP1572962.
LF373411 - JP 2014500723-A/180914: Polycomb-Associated Non-Coding RNAs.
MA608988 - JP 2018138019-A/180914: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ASTER_HUMAN, B2R4T8, C19orf56, CGI-140, ENST00000596731.1, ENST00000596731.2, ENST00000596731.3, ENST00000596731.4, ENST00000596731.5, ENST00000596731.6, My006, NM_016145, PTD008, Q9BVI3, Q9Y284, uc002mud.1, uc002mud.2, uc002mud.3, uc002mud.4, uc002mud.5
UCSC ID: ENST00000596731.7
RefSeq Accession: NM_016145
Protein: Q9Y284 (aka ASTER_HUMAN)
CCDS: CCDS12274.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.