Human Gene NCR1 (ENST00000291890.9) from GENCODE V44
Description: Homo sapiens natural cytotoxicity triggering receptor 1 (NCR1), transcript variant 1, mRNA. (from RefSeq NM_004829)
Gencode Transcript: ENST00000291890.9
Gencode Gene: ENSG00000189430.13
Transcript (Including UTRs)
Position: hg38 chr19:54,906,148-54,913,073 Size: 6,926 Total Exon Count: 7 Strand: +
Coding Region
Position: hg38 chr19:54,906,188-54,912,871 Size: 6,684 Coding Exon Count: 7
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BC030265 - Homo sapiens cDNA clone IMAGE:5217510, **** WARNING: chimeric clone ****.AJ001383 - Homo sapiens activating NK-receptor (NK-p46) mRNA.JD123479 - Sequence 104503 from Patent EP1572962.BC064806 - Homo sapiens natural cytotoxicity triggering receptor 1, mRNA (cDNA clone MGC:65100 IMAGE:5218848), complete cds.AJ006121 - Homo sapiens mRNA for NK receptor (NKp46), isoform b.AJ006122 - Homo sapiens mRNA for NK receptor (NKp46) isoform c.AJ006123 - Homo sapiens mRNA for NK receptor (NKp46), isoform d.CU687946 - Synthetic construct Homo sapiens gateway clone IMAGE:100021713 5' read NCR1 mRNA.HQ448088 - Synthetic construct Homo sapiens clone IMAGE:100071468; CCSB011968_02 natural cytotoxicity triggering receptor 1 (NCR1) gene, encodes complete protein.KJ892768 - Synthetic construct Homo sapiens clone ccsbBroadEn_02162 NCR1 gene, encodes complete protein.AY346373 - Homo sapiens natural cytotoxicity triggering receptor 1 (NCR1) mRNA, complete cds; alternatively spliced.JD154769 - Sequence 135793 from Patent EP1572962.JD051777 - Sequence 32801 from Patent EP1572962.JD154693 - Sequence 135717 from Patent EP1572962.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes hsa04650 - Natural killer cell mediated cytotoxicity
Other Names for This Gene
Alternate Gene Symbols: A0A0A0MQZ0, ENST00000291890.1, ENST00000291890.2, ENST00000291890.3, ENST00000291890.4, ENST00000291890.5, ENST00000291890.6, ENST00000291890.7, ENST00000291890.8, NM_004829, uc002qib.1, uc002qib.2, uc002qib.3, uc002qib.4UCSC ID: ENST00000291890.9RefSeq Accession: NM_004829
CCDS: CCDS12911.1 , CCDS46181.1
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.