Human Gene LOC339788 (uc002qyw.3) Description and Page Index
  Description: Homo sapiens uncharacterized LOC339788 (LOC339788), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr2:8,062,556-8,116,977 Size: 54,422 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:8,062,556-8,116,977)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneNetworkLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.21 RPKM in Brain - Cortex
Total median expression: 2.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC043361 - Homo sapiens cDNA clone IMAGE:4183352.
JD565720 - Sequence 546744 from Patent EP1572962.
JD194299 - Sequence 175323 from Patent EP1572962.
JD204238 - Sequence 185262 from Patent EP1572962.
JD319801 - Sequence 300825 from Patent EP1572962.
JD037882 - Sequence 18906 from Patent EP1572962.
JD302034 - Sequence 283058 from Patent EP1572962.
JD284436 - Sequence 265460 from Patent EP1572962.
JD224471 - Sequence 205495 from Patent EP1572962.
JD091151 - Sequence 72175 from Patent EP1572962.
JD255482 - Sequence 236506 from Patent EP1572962.
BC103700 - Homo sapiens cDNA clone IMAGE:40023106.
BC104747 - Homo sapiens cDNA clone IMAGE:40023110.
BC105688 - Homo sapiens hypothetical LOC339788, mRNA (cDNA clone IMAGE:40023107).
BC107115 - Homo sapiens cDNA clone IMAGE:40023209.
JD285755 - Sequence 266779 from Patent EP1572962.
JD069595 - Sequence 50619 from Patent EP1572962.
JD501762 - Sequence 482786 from Patent EP1572962.
JD301495 - Sequence 282519 from Patent EP1572962.
KJ900961 - Synthetic construct Homo sapiens clone ccsbBroadEn_10355 LOC339788 gene, encodes complete protein.
JD313919 - Sequence 294943 from Patent EP1572962.
JD260627 - Sequence 241651 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC104747
UCSC ID: uc002qyw.3
RefSeq Accession: NR_015405

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC104747.1
exon count: 4CDS single in 3' UTR: no RNA size: 1084
ORF size: 0CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 389.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.