Human Gene ADCY3 (ENST00000260600.9) from GENCODE V44
  Description: Homo sapiens adenylate cyclase 3 (ADCY3), transcript variant 7, mRNA. (from RefSeq NM_001377132)
RefSeq Summary (NM_004036): This gene encodes adenylyl cyclase 3 which is a membrane-associated enzyme and catalyzes the formation of the secondary messenger cyclic adenosine monophosphate (cAMP). This protein appears to be widely expressed in various human tissues and may be involved in a number of physiological and pathophysiological metabolic processes. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2016].
Gencode Transcript: ENST00000260600.9
Gencode Gene: ENSG00000138031.15
Transcript (Including UTRs)
   Position: hg38 chr2:24,819,169-24,919,839 Size: 100,671 Total Exon Count: 21 Strand: -
Coding Region
   Position: hg38 chr2:24,819,932-24,918,987 Size: 99,056 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:24,819,169-24,919,839)mRNA (may differ from genome)Protein (1144 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ADCY3_HUMAN
DESCRIPTION: RecName: Full=Adenylate cyclase type 3; EC=4.6.1.1; AltName: Full=ATP pyrophosphate-lyase 3; AltName: Full=Adenylate cyclase type III; Short=AC-III; AltName: Full=Adenylate cyclase, olfactive type; AltName: Full=Adenylyl cyclase 3; Short=AC3;
FUNCTION: Mediates odorant detection (possibly) via modulation of intracellular cAMP concentration.
CATALYTIC ACTIVITY: ATP = 3',5'-cyclic AMP + diphosphate.
COFACTOR: Binds 2 magnesium ions per subunit (By similarity).
ENZYME REGULATION: Activated by calcium/calmodulin.
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in brain, heart, kidney, liver, lung, pancreas, placenta, and skeletal muscle.
SIMILARITY: Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
SIMILARITY: Contains 2 guanylate cyclase domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C021279 (1R-(exo,exo))-3-(4-fluorophenyl)-8-methyl-8- azabicyclo(3.2.1)octane-2-carboxylic acid, methyl ester
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D000643 Ammonium Chloride
  • D017638 Asbestos, Crocidolite
  • D001564 Benzo(a)pyrene
  • D002220 Carbamazepine
  • D002713 Chlorine
  • D002794 Choline
  • D003993 Dibutyl Phthalate
          more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.92 RPKM in Nerve - Tibial
Total median expression: 622.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -382.30852-0.449 Picture PostScript Text
3' UTR -261.50763-0.343 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001054 - A/G_cyclase
IPR018297 - A/G_cyclase_CS

Pfam Domains:
PF00211 - Adenylate and Guanylate cyclase catalytic domain

ModBase Predicted Comparative 3D Structure on O60266
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004016 adenylate cyclase activity
GO:0004383 guanylate cyclase activity
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0016829 lyase activity
GO:0016849 phosphorus-oxygen lyase activity
GO:0046872 metal ion binding

Biological Process:
GO:0003091 renal water homeostasis
GO:0006171 cAMP biosynthetic process
GO:0006182 cGMP biosynthetic process
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007189 adenylate cyclase-activating G-protein coupled receptor signaling pathway
GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0007338 single fertilization
GO:0007340 acrosome reaction
GO:0007608 sensory perception of smell
GO:0008355 olfactory learning
GO:0009190 cyclic nucleotide biosynthetic process
GO:0030317 flagellated sperm motility
GO:0035556 intracellular signal transduction
GO:0050896 response to stimulus
GO:0071377 cellular response to glucagon stimulus
GO:1904322 cellular response to forskolin

Cellular Component:
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005929 cilium
GO:0008074 guanylate cyclase complex, soluble
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  AB011083 - Homo sapiens mRNA for KIAA0511 protein, partial cds.
AK027857 - Homo sapiens cDNA FLJ14951 fis, clone PLACE3000020, highly similar to Adenylate cyclase type 3 (EC 4.6.1.1).
AK122926 - Homo sapiens cDNA FLJ16612 fis, clone TESTI4012010, highly similar to Adenylate cyclase type 3 (EC 4.6.1.1).
AF033861 - Homo sapiens type III adenylyl cyclase (AC-III) mRNA, complete cds.
BC126235 - Homo sapiens adenylate cyclase 3, mRNA (cDNA clone MGC:161513 IMAGE:8991951), complete cds.
BC144119 - Homo sapiens adenylate cyclase 3, mRNA (cDNA clone MGC:177656 IMAGE:9052639), complete cds.
KJ890630 - Synthetic construct Homo sapiens clone ccsbBroadEn_00024 ADCY3 gene, encodes complete protein.
HQ258684 - Synthetic construct Homo sapiens clone IMAGE:100072714 adenylate cyclase 3 (ADCY3) gene, encodes complete protein.
AF087963 - Homo sapiens full length insert cDNA clone YU49D08.
BC020148 - Homo sapiens cDNA clone IMAGE:4341424, containing frame-shift errors.
AK075424 - Homo sapiens cDNA PSEC0115 fis, clone PLACE1000086, highly similar to ADENYLATE CYCLASE, OLFACTIVE TYPE (EC 4.6.1.1).
AK095173 - Homo sapiens cDNA FLJ37854 fis, clone BRSSN2014610, highly similar to Adenylate cyclase type 3 (EC 4.6.1.1).
JD344606 - Sequence 325630 from Patent EP1572962.
JD162858 - Sequence 143882 from Patent EP1572962.
JD076539 - Sequence 57563 from Patent EP1572962.
JD162602 - Sequence 143626 from Patent EP1572962.
JD202089 - Sequence 183113 from Patent EP1572962.
JD445931 - Sequence 426955 from Patent EP1572962.
JD552112 - Sequence 533136 from Patent EP1572962.
JD037018 - Sequence 18042 from Patent EP1572962.
JD164167 - Sequence 145191 from Patent EP1572962.
JD020400 - Sequence 1424 from Patent EP1572962.
JD437317 - Sequence 418341 from Patent EP1572962.
JD021497 - Sequence 2521 from Patent EP1572962.
JD032099 - Sequence 13123 from Patent EP1572962.
DQ579852 - Homo sapiens piRNA piR-47964, complete sequence.
DQ571701 - Homo sapiens piRNA piR-31813, complete sequence.
JD555535 - Sequence 536559 from Patent EP1572962.
JD436408 - Sequence 417432 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00230 - Purine metabolism
hsa04020 - Calcium signaling pathway
hsa04062 - Chemokine signaling pathway
hsa04114 - Oocyte meiosis
hsa04270 - Vascular smooth muscle contraction
hsa04540 - Gap junction
hsa04740 - Olfactory transduction
hsa04912 - GnRH signaling pathway
hsa04914 - Progesterone-mediated oocyte maturation
hsa04916 - Melanogenesis
hsa04962 - Vasopressin-regulated water reabsorption
hsa05110 - Vibrio cholerae infection
hsa05414 - Dilated cardiomyopathy

Reactome (by CSHL, EBI, and GO)

Protein O60266 (Reactome details) participates in the following event(s):

R-HSA-163617 G alpha (s) activates adenylate cyclase
R-HSA-170672 Galpha-olf:GTP binds to adenylate cyclase and activates it
R-HSA-392064 G alpha (z) inhibits adenylate cyclase
R-HSA-392206 G alpha (i) inhibits adenylate cyclase
R-HSA-170674 Dissociation of the Gi alpha:G olf complex
R-HSA-170677 The G alpha-olf:GDP:Adenylate cyclase complex dissociates
R-HSA-442715 Activation of Adenylate Cyclase
R-HSA-170685 Adenylaye cyclase increases the GTPase activity of G alpha-olf
R-HSA-170686 Adenylate cyclase increases the GTPase activity of Gi alpha
R-HSA-170671 G alpha-olf:GTP binds to Gi alpha1:GTP:adenylate cyclase complex
R-HSA-111930 Adenylate cyclase produces cAMP
R-HSA-392129 Adenylate cyclase converts ATP to 3',5'-cyclic AMP (cAMP) and pyrophosphate
R-HSA-5610727 GPR161 promotes cAMP production in a G alpha(s)-dependent manner
R-HSA-164377 Activated Adenylate cyclase catalyses cAMP synthesis
R-HSA-170676 Adenylate cyclase converts ATP into cyclic AMP
R-HSA-170666 Adenylate cyclase increases the GTPase activity of G alpha-olf
R-HSA-163359 Glucagon signaling in metabolic regulation
R-HSA-418555 G alpha (s) signalling events
R-HSA-432040 Vasopressin regulates renal water homeostasis via Aquaporins
R-HSA-170660 Adenylate cyclase activating pathway
R-HSA-418597 G alpha (z) signalling events
R-HSA-170670 Adenylate cyclase inhibitory pathway
R-HSA-418594 G alpha (i) signalling events
R-HSA-442720 CREB phosphorylation through the activation of Adenylate Cyclase
R-HSA-163685 Energy Metabolism
R-HSA-388396 GPCR downstream signalling
R-HSA-445717 Aquaporin-mediated transport
R-HSA-112040 G-protein mediated events
R-HSA-997269 Inhibition of adenylate cyclase pathway
R-HSA-163615 PKA activation
R-HSA-438064 Post NMDA receptor activation events
R-HSA-5610787 Hedgehog 'off' state
R-HSA-164378 PKA activation in glucagon signalling
R-HSA-1430728 Metabolism
R-HSA-372790 Signaling by GPCR
R-HSA-382551 Transport of small molecules
R-HSA-111885 Opioid Signalling
R-HSA-991365 Activation of GABAB receptors
R-HSA-111931 PKA-mediated phosphorylation of CREB
R-HSA-442755 Activation of NMDA receptor and postsynaptic events
R-HSA-5358351 Signaling by Hedgehog
R-HSA-162582 Signal Transduction
R-HSA-977444 GABA B receptor activation
R-HSA-111933 Calmodulin induced events
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-977443 GABA receptor activation
R-HSA-111997 CaM pathway
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-111996 Ca-dependent events
R-HSA-1489509 DAG and IP3 signaling
R-HSA-112316 Neuronal System
R-HSA-112043 PLC beta mediated events
R-HSA-9006925 Intracellular signaling by second messengers

-  Other Names for This Gene
  Alternate Gene Symbols: ADCY3_HUMAN, ENST00000260600.1, ENST00000260600.2, ENST00000260600.3, ENST00000260600.4, ENST00000260600.5, ENST00000260600.6, ENST00000260600.7, ENST00000260600.8, KIAA0511, NM_001377132, O60266, Q53T54, Q9UDB1, uc002rfs.1, uc002rfs.2, uc002rfs.3, uc002rfs.4, uc002rfs.5
UCSC ID: ENST00000260600.9
RefSeq Accession: NM_004036
Protein: O60266 (aka ADCY3_HUMAN or CYA3_HUMAN)
CCDS: CCDS1715.1, CCDS82424.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.