Human Gene UGP2 (ENST00000394417.7) from GENCODE V44
  Description: Homo sapiens UDP-glucose pyrophosphorylase 2 (UGP2), transcript variant 7, mRNA. (from RefSeq NM_001377528)
RefSeq Summary (NM_001001521): The enzyme encoded by this gene is an important intermediary in mammalian carbohydrate interconversions. It transfers a glucose moiety from glucose-1-phosphate to MgUTP and forms UDP-glucose and MgPPi. In liver and muscle tissue, UDP-glucose is a direct precursor of glycogen; in lactating mammary gland it is converted to UDP-galactose which is then converted to lactose. The eukaryotic enzyme has no significant sequence similarity to the prokaryotic enzyme. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000394417.7
Gencode Gene: ENSG00000169764.16
Transcript (Including UTRs)
   Position: hg38 chr2:63,840,969-63,891,560 Size: 50,592 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg38 chr2:63,856,320-63,891,227 Size: 34,908 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:63,840,969-63,891,560)mRNA (may differ from genome)Protein (497 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGencode
GeneCardsHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UGPA_HUMAN
DESCRIPTION: RecName: Full=UTP--glucose-1-phosphate uridylyltransferase; EC=2.7.7.9; AltName: Full=UDP-glucose pyrophosphorylase; Short=UDPGP; Short=UGPase;
FUNCTION: Plays a central role as a glucosyl donor in cellular metabolic pathways.
CATALYTIC ACTIVITY: UTP + alpha-D-glucose 1-phosphate = diphosphate + UDP-glucose.
SUBUNIT: Homooctamer (By similarity).
INTERACTION: P62993:GRB2; NbExp=2; IntAct=EBI-743729, EBI-401755;
SUBCELLULAR LOCATION: Cytoplasm.
SIMILARITY: Belongs to the UDPGP type 1 family.
CAUTION: The human genome was initially thought to contain 2 genes for UTP--glucose-1-phosphate uridylyltransferase: UGP1 and UGP2. However, the sequence defined as UGP1 (PubMed:8354390) probably does not exist and corresponds to UGP2.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 101.20 RPKM in Muscle - Skeletal
Total median expression: 2058.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -98.20278-0.353 Picture PostScript Text
3' UTR -65.10333-0.195 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002618 - UDPGP_trans
IPR016267 - UDPGP_trans_subgr

Pfam Domains:
PF01704 - UTP--glucose-1-phosphate uridylyltransferase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3R2W - X-ray MuPIT 3R3I - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q16851
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity
GO:0005515 protein binding
GO:0005536 glucose binding
GO:0016740 transferase activity
GO:0016779 nucleotidyltransferase activity
GO:0032557 pyrimidine ribonucleotide binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0070569 uridylyltransferase activity

Biological Process:
GO:0005977 glycogen metabolic process
GO:0005978 glycogen biosynthetic process
GO:0006011 UDP-glucose metabolic process
GO:0006065 UDP-glucuronate biosynthetic process
GO:0008152 metabolic process
GO:0019255 glucose 1-phosphate metabolic process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  HM005681 - Homo sapiens clone HTL-T-58p testis tissue sperm-binding protein Li 58p mRNA, complete cds.
BC002954 - Homo sapiens UDP-glucose pyrophosphorylase 2, mRNA (cDNA clone MGC:1251 IMAGE:3542849), complete cds.
U27460 - Human uridine diphosphoglucose pyrophosphorylase mRNA, complete cds.
BX647825 - Homo sapiens mRNA; cDNA DKFZp686F2086 (from clone DKFZp686F2086).
AK314263 - Homo sapiens cDNA, FLJ95012, highly similar to Homo sapiens UDP-glucose pyrophosphorylase 2 (UGP2), mRNA.
BC047004 - Homo sapiens UDP-glucose pyrophosphorylase 2, mRNA (cDNA clone MGC:54133 IMAGE:3924393), complete cds.
BC000173 - Homo sapiens UDP-glucose pyrophosphorylase 2, mRNA (cDNA clone MGC:5239 IMAGE:2985723), complete cds.
AF086113 - Homo sapiens full length insert cDNA clone ZA06D10.
CU692350 - Synthetic construct Homo sapiens gateway clone IMAGE:100021479 5' read UGP2 mRNA.
KJ892357 - Synthetic construct Homo sapiens clone ccsbBroadEn_01751 UGP2 gene, encodes complete protein.
AK300731 - Homo sapiens cDNA FLJ56155 complete cds, highly similar to UTP--glucose-1-phosphate uridylyltransferase 2 (EC 2.7.7.9).
CU678310 - Synthetic construct Homo sapiens gateway clone IMAGE:100020301 5' read UGP2 mRNA.
HQ448346 - Synthetic construct Homo sapiens clone IMAGE:100071768; CCSB003738_02 UDP-glucose pyrophosphorylase 2 (UGP2) gene, encodes complete protein.
KJ897725 - Synthetic construct Homo sapiens clone ccsbBroadEn_07119 UGP2 gene, encodes complete protein.
BX537559 - Homo sapiens mRNA; cDNA DKFZp686A226 (from clone DKFZp686A226).
DL491458 - Novel nucleic acids.
JD087353 - Sequence 68377 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00040 - Pentose and glucuronate interconversions
hsa00052 - Galactose metabolism
hsa00500 - Starch and sucrose metabolism
hsa00520 - Amino sugar and nucleotide sugar metabolism
hsa01100 - Metabolic pathways

Reactome (by CSHL, EBI, and GO)

Protein Q16851 (Reactome details) participates in the following event(s):

R-HSA-70286 UTP + D-glucose 1-phosphate <=> pyrophosphate + UDP-glucose
R-HSA-173599 Formation of the active cofactor, UDP-glucuronate
R-HSA-3322077 Glycogen synthesis
R-HSA-156588 Glucuronidation
R-HSA-8982491 Glycogen metabolism
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-71387 Metabolism of carbohydrates
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000394417.1, ENST00000394417.2, ENST00000394417.3, ENST00000394417.4, ENST00000394417.5, ENST00000394417.6, NM_001377528, Q07131, Q0P6K2, Q16851, Q86Y81, Q9BU15, uc002scl.1, uc002scl.2, uc002scl.3, uc002scl.4, uc002scl.5, UGP1, UGPA_HUMAN
UCSC ID: ENST00000394417.7
RefSeq Accession: NM_001001521
Protein: Q16851 (aka UGPA_HUMAN)
CCDS: CCDS42690.1, CCDS1875.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.