Human Gene CNRIP1 (ENST00000409559.7) from GENCODE V44
  Description: Homo sapiens cannabinoid receptor interacting protein 1 (CNRIP1), transcript variant 2, mRNA. (from RefSeq NM_001111101)
RefSeq Summary (NM_001111101): This gene encodes a protein that interacts with the C-terminal tail of cannabinoid receptor 1. Two transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jul 2013]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Gencode Transcript: ENST00000409559.7
Gencode Gene: ENSG00000119865.9
Transcript (Including UTRs)
   Position: hg38 chr2:68,284,171-68,319,400 Size: 35,230 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg38 chr2:68,284,428-68,319,400 Size: 34,973 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:68,284,171-68,319,400)mRNA (may differ from genome)Protein (128 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CNRP1_HUMAN
DESCRIPTION: RecName: Full=CB1 cannabinoid receptor-interacting protein 1; Short=CRIP-1;
FUNCTION: Isoform 1 suppresses cannabinoid receptor CNR1-mediated tonic inhibition of voltage-gated calcium channels. Isoform 2 does not have this effect.
SUBUNIT: Interacts with the cannabinoid receptor CNR1 (via C- terminus). Does not interact with cannabinoid receptor CNR2.
SIMILARITY: Belongs to the CNRIP family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.13 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 593.93 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -66.50257-0.259 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q96F85
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008022 protein C-terminus binding
GO:0031718 type 1 cannabinoid receptor binding

Biological Process:
GO:0010469 regulation of receptor activity
GO:2000272 negative regulation of receptor activity

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0043209 myelin sheath


-  Descriptions from all associated GenBank mRNAs
  AY144596 - Homo sapiens cannabinoid receptor CB1-interacting protein 1 mRNA, complete cds.
AL110235 - Homo sapiens mRNA; cDNA DKFZp566K1924 (from clone DKFZp566K1924).
BC011535 - Homo sapiens cannabinoid receptor interacting protein 1, mRNA (cDNA clone MGC:17718 IMAGE:3870150), complete cds.
AK311784 - Homo sapiens cDNA, FLJ92045.
KJ893491 - Synthetic construct Homo sapiens clone ccsbBroadEn_02885 CNRIP1 gene, encodes complete protein.
AK308979 - Homo sapiens cDNA, FLJ99020.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R4D0, C2orf32, CNRP1_HUMAN, ENST00000409559.1, ENST00000409559.2, ENST00000409559.3, ENST00000409559.4, ENST00000409559.5, ENST00000409559.6, NM_001111101, Q49AN4, Q96F85, Q9UFZ0, uc002sej.1, uc002sej.2, uc002sej.3, uc002sej.4, uc002sej.5
UCSC ID: ENST00000409559.7
RefSeq Accession: NM_001111101
Protein: Q96F85 (aka CNRP1_HUMAN)
CCDS: CCDS46311.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.