Human Gene CCDC142 (ENST00000290418.4) from GENCODE V44
Description: Homo sapiens coiled-coil domain containing 142 (CCDC142), transcript variant 2, mRNA. (from RefSeq NM_032779)
Gencode Transcript: ENST00000290418.4
Gencode Gene: ENSG00000135637.14
Transcript (Including UTRs)
Position: hg38 chr2:74,474,102-74,482,996 Size: 8,895 Total Exon Count: 9 Strand: -
Coding Region
Position: hg38 chr2:74,474,546-74,482,837 Size: 8,292 Coding Exon Count: 9
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CC142_HUMAN
DESCRIPTION: RecName: Full=Coiled-coil domain-containing protein 142;
SEQUENCE CAUTION: Sequence=BAC11474.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR026700 - CCDC142
ModBase Predicted Comparative 3D Structure on Q17RM4
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
LF207220 - JP 2014500723-A/14723: Polycomb-Associated Non-Coding RNAs.MA442797 - JP 2018138019-A/14723: Polycomb-Associated Non-Coding RNAs.AK075209 - Homo sapiens cDNA FLJ90728 fis, clone PLACE1009735.LF207221 - JP 2014500723-A/14724: Polycomb-Associated Non-Coding RNAs.MA442798 - JP 2018138019-A/14724: Polycomb-Associated Non-Coding RNAs.LF363231 - JP 2014500723-A/170734: Polycomb-Associated Non-Coding RNAs.MA598808 - JP 2018138019-A/170734: Polycomb-Associated Non-Coding RNAs.AK027303 - Homo sapiens cDNA FLJ14397 fis, clone HEMBA1003480.AK075543 - Homo sapiens cDNA PSEC0243 fis, clone NT2RP3000326.JD371036 - Sequence 352060 from Patent EP1572962.JD383290 - Sequence 364314 from Patent EP1572962.JD517064 - Sequence 498088 from Patent EP1572962.JD085560 - Sequence 66584 from Patent EP1572962.JD447808 - Sequence 428832 from Patent EP1572962.JD332084 - Sequence 313108 from Patent EP1572962.JD175760 - Sequence 156784 from Patent EP1572962.JD531492 - Sequence 512516 from Patent EP1572962.JD444827 - Sequence 425851 from Patent EP1572962.JD488607 - Sequence 469631 from Patent EP1572962.JD038398 - Sequence 19422 from Patent EP1572962.JD311059 - Sequence 292083 from Patent EP1572962.JD538969 - Sequence 519993 from Patent EP1572962.JD353245 - Sequence 334269 from Patent EP1572962.JD130709 - Sequence 111733 from Patent EP1572962.BC117269 - Homo sapiens coiled-coil domain containing 142, mRNA (cDNA clone MGC:150878 IMAGE:40125820), complete cds.BC143398 - Homo sapiens coiled-coil domain containing 142, mRNA (cDNA clone MGC:176922 IMAGE:9051905), complete cds.BC143399 - Homo sapiens cDNA clone IMAGE:9051906.JD339848 - Sequence 320872 from Patent EP1572962.JD044429 - Sequence 25453 from Patent EP1572962.HQ258495 - Synthetic construct Homo sapiens clone IMAGE:100072924 coiled-coil domain containing 142 (CCDC142) gene, encodes complete protein.KJ903471 - Synthetic construct Homo sapiens clone ccsbBroadEn_12865 CCDC142 gene, encodes complete protein.JD469174 - Sequence 450198 from Patent EP1572962.JD496287 - Sequence 477311 from Patent EP1572962.LF212052 - JP 2014500723-A/19555: Polycomb-Associated Non-Coding RNAs.MA447629 - JP 2018138019-A/19555: Polycomb-Associated Non-Coding RNAs.DQ598324 - Homo sapiens piRNA piR-36390, complete sequence.JD214719 - Sequence 195743 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: B7ZKV5, CC142_HUMAN, ENST00000290418.1, ENST00000290418.2, ENST00000290418.3, NM_032779, PSEC0243, Q17RM4, Q8NBJ3, Q8NBV2, Q96KA7, uc002slq.1, uc002slq.2, uc002slq.3, uc002slq.4UCSC ID: ENST00000290418.4RefSeq Accession: NM_032779
Protein: Q17RM4
(aka CC142_HUMAN)
CCDS: CCDS1945.1
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.