Human Gene HDLBP (ENST00000391975.5) from GENCODE V44
Description: Homo sapiens high density lipoprotein binding protein (HDLBP), transcript variant 2, mRNA. (from RefSeq NM_203346)
RefSeq Summary (NM_203346): The protein encoded by this gene binds high density lipoprotein (HDL) and may function to regulate excess cholesterol levels in cells. The encoded protein also binds RNA and can induce heterochromatin formation. [provided by RefSeq, Mar 2016].
Gencode Transcript: ENST00000391975.5
Gencode Gene: ENSG00000115677.18
Transcript (Including UTRs)
Position: hg38 chr2:241,227,264-241,272,886 Size: 45,623 Total Exon Count: 28 Strand: -
Coding Region
Position: hg38 chr2:241,229,601-241,266,869 Size: 37,269 Coding Exon Count: 26
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BC001179 - Homo sapiens high density lipoprotein binding protein, mRNA (cDNA clone MGC:2301 IMAGE:3528704), complete cds.AK296684 - Homo sapiens cDNA FLJ55700 complete cds, moderately similar to Vigilin.BX647759 - Homo sapiens mRNA; cDNA DKFZp686N1331 (from clone DKFZp686N1331).AK312335 - Homo sapiens cDNA, FLJ92652, highly similar to Homo sapiens high density lipoprotein binding protein (vigilin)(HDLBP), mRNA.BC038965 - Homo sapiens high density lipoprotein binding protein (vigilin), mRNA (cDNA clone IMAGE:3920936).BC009422 - Homo sapiens cDNA clone IMAGE:3613536, partial cds.BC021817 - Homo sapiens high density lipoprotein binding protein, mRNA (cDNA clone IMAGE:4915167), with apparent retained intron.AK026138 - Homo sapiens cDNA: FLJ22485 fis, clone HRC10901, highly similar to AF116718 Homo sapiens PRO2900 mRNA.BC058826 - Homo sapiens cDNA clone IMAGE:4292069, partial cds.M64098 - Human high density lipoprotein binding protein (HBP) mRNA, complete cds.BC007961 - Homo sapiens cDNA clone IMAGE:4301560, containing frame-shift errors.BC014305 - Homo sapiens high density lipoprotein binding protein, mRNA (cDNA clone IMAGE:4099438), partial cds.AK300312 - Homo sapiens cDNA FLJ56889 complete cds, moderately similar to Vigilin.AK092755 - Homo sapiens cDNA FLJ35436 fis, clone SMINT2002778.AK131375 - Homo sapiens cDNA FLJ16432 fis, clone BRACE3010076, highly similar to Vigilin.AK127833 - Homo sapiens cDNA FLJ45936 fis, clone PLACE7004103, highly similar to Vigilin.JD362906 - Sequence 343930 from Patent EP1572962.JD045870 - Sequence 26894 from Patent EP1572962.JD253879 - Sequence 234903 from Patent EP1572962.JD107331 - Sequence 88355 from Patent EP1572962.JD233410 - Sequence 214434 from Patent EP1572962.BC113120 - Homo sapiens high density lipoprotein binding protein, mRNA (cDNA clone IMAGE:40006561), partial cds.JD198689 - Sequence 179713 from Patent EP1572962.JD236209 - Sequence 217233 from Patent EP1572962.JD061672 - Sequence 42696 from Patent EP1572962.DQ891887 - Synthetic construct clone IMAGE:100004517; FLH180963.01X; RZPDo839H11134D high density lipoprotein binding protein (vigilin) (HDLBP) gene, encodes complete protein.EU176652 - Synthetic construct Homo sapiens clone IMAGE:100011448; FLH180962.01L; RZPDo839A11254D high density lipoprotein binding protein (vigilin) (HDLBP) gene, encodes complete protein.AB385256 - Synthetic construct DNA, clone: pF1KB9503, Homo sapiens HDLBP gene for vigilin, complete cds, without stop codon, in Flexi system.JD029478 - Sequence 10502 from Patent EP1572962.JD025965 - Sequence 6989 from Patent EP1572962.JD022736 - Sequence 3760 from Patent EP1572962.JD021815 - Sequence 2839 from Patent EP1572962.JD026293 - Sequence 7317 from Patent EP1572962.JD029825 - Sequence 10849 from Patent EP1572962.JD025377 - Sequence 6401 from Patent EP1572962.JD019881 - Sequence 905 from Patent EP1572962.JD022289 - Sequence 3313 from Patent EP1572962.JD034514 - Sequence 15538 from Patent EP1572962.JD023067 - Sequence 4091 from Patent EP1572962.JD029931 - Sequence 10955 from Patent EP1572962.AK309075 - Homo sapiens cDNA, FLJ99116.BX648235 - Homo sapiens mRNA; cDNA DKFZp686L08115 (from clone DKFZp686L08115).JD024955 - Sequence 5979 from Patent EP1572962.LF205314 - JP 2014500723-A/12817: Polycomb-Associated Non-Coding RNAs.MA440891 - JP 2018138019-A/12817: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: A0A024R4E5, ENST00000391975.1, ENST00000391975.2, ENST00000391975.3, ENST00000391975.4, NM_203346, uc002waz.1, uc002waz.2, uc002waz.3, uc002waz.4UCSC ID: ENST00000391975.5RefSeq Accession: NM_203346
CCDS: CCDS2547.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.