Human Gene PRELID3B (ENST00000355937.9) from GENCODE V44
  Description: Homo sapiens PRELI domain containing 3B (PRELID3B), transcript variant 1, mRNA. (from RefSeq NM_016045)
Gencode Transcript: ENST00000355937.9
Gencode Gene: ENSG00000101166.16
Transcript (Including UTRs)
   Position: hg38 chr20:59,033,145-59,042,786 Size: 9,642 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg38 chr20:59,035,007-59,042,730 Size: 7,724 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:59,033,145-59,042,786)mRNA (may differ from genome)Protein (194 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsHPRD
LynxMGIneXtProtPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SLMO2_HUMAN
DESCRIPTION: RecName: Full=Protein slowmo homolog 2;
SIMILARITY: Belongs to the slowmo family.
SIMILARITY: Contains 1 PRELI/MSF1 domain.
SEQUENCE CAUTION: Sequence=AAD34102.1; Type=Frameshift; Positions=192;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.17 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 685.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.2056-0.325 Picture PostScript Text
3' UTR -413.201862-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006797 - PRELI/MSF1

Pfam Domains:
PF04707 - PRELI-like family

ModBase Predicted Comparative 3D Structure on Q9Y3B1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene Details    Gene Details
Gene Sorter    Gene Sorter
MGIRGDEnsemblEnsemblWormBaseSGD
Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence
AlignmentAlignmentAlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:1990050 phosphatidic acid transporter activity

Biological Process:
GO:0015914 phospholipid transport

Cellular Component:
GO:0005758 mitochondrial intermembrane space


-  Descriptions from all associated GenBank mRNAs
  BC010649 - Homo sapiens slowmo homolog 2 (Drosophila), mRNA (cDNA clone MGC:8785 IMAGE:3873112), complete cds.
BC013969 - Homo sapiens slowmo homolog 2 (Drosophila), mRNA (cDNA clone MGC:3361 IMAGE:3631601), complete cds.
AF151865 - Homo sapiens CGI-107 protein mRNA, complete cds.
JD243095 - Sequence 224119 from Patent EP1572962.
JD037401 - Sequence 18425 from Patent EP1572962.
JD189819 - Sequence 170843 from Patent EP1572962.
AK002157 - Homo sapiens cDNA FLJ11295 fis, clone PLACE1009721, weakly similar to MSF1 PROTEIN.
JD565937 - Sequence 546961 from Patent EP1572962.
JD301049 - Sequence 282073 from Patent EP1572962.
JD280241 - Sequence 261265 from Patent EP1572962.
JD146688 - Sequence 127712 from Patent EP1572962.
JD565394 - Sequence 546418 from Patent EP1572962.
AK298135 - Homo sapiens cDNA FLJ55117 complete cds.
JD219259 - Sequence 200283 from Patent EP1572962.
AK314449 - Homo sapiens cDNA, FLJ95248.
JF432587 - Synthetic construct Homo sapiens clone IMAGE:100073824 slowmo homolog 2 (Drosophila) (SLMO2) gene, encodes complete protein.
JD353252 - Sequence 334276 from Patent EP1572962.
JD453691 - Sequence 434715 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C20orf45, CGI-107, E1P5I8, ENST00000355937.1, ENST00000355937.2, ENST00000355937.3, ENST00000355937.4, ENST00000355937.5, ENST00000355937.6, ENST00000355937.7, ENST00000355937.8, NM_016045, Q9NUL0, Q9Y3B1, SLMO2, SLMO2_HUMAN, uc002yam.1, uc002yam.2, uc002yam.3, uc002yam.4, uc002yam.5
UCSC ID: ENST00000355937.9
RefSeq Accession: NM_016045
Protein: Q9Y3B1 (aka SLMO2_HUMAN)
CCDS: CCDS42893.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.