Human Gene SNU13 (ENST00000648674.1) from GENCODE V44
Description: Homo sapiens small nuclear ribonucleoprotein 13 (SNU13), transcript variant 1, mRNA. (from RefSeq NM_005008) RefSeq Summary (NM_005008): Originally named because of its sequence similarity to the Saccharomyces cerevisiae NHP2 (non-histone protein 2), this protein appears to be a highly conserved nuclear protein that is a component of the [U4/U6.U5] tri-snRNP. It binds to the 5' stem-loop of U4 snRNA. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]. Gencode Transcript: ENST00000648674.1 Gencode Gene: ENSG00000100138.15 Transcript (Including UTRs) Position: hg38 chr22:41,674,615-41,688,895 Size: 14,281 Total Exon Count: 4 Strand: - Coding Region Position: hg38 chr22:41,674,933-41,682,358 Size: 7,426 Coding Exon Count: 3
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Pfam Domains: PF01248 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
ModBase Predicted Comparative 3D Structure on Q6FHM6
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.