Human Gene BIK (ENST00000216115.3) from GENCODE V44
  Description: Homo sapiens BCL2 interacting killer (BIK), mRNA. (from RefSeq NM_001197)
RefSeq Summary (NM_001197): The protein encoded by this gene shares a critical BH3 domain with other death-promoting proteins, such as BID, BAK, BAD and BAX, that is required for its pro-apoptotic activity, and for interaction with anti-apoptotic members of the BCL2 family, and viral survival-promoting proteins. Since the activity of this protein is suppressed in the presence of survival-promoting proteins, it is suggested as a likely target for anti-apoptotic proteins. [provided by RefSeq, Sep 2011].
Gencode Transcript: ENST00000216115.3
Gencode Gene: ENSG00000100290.3
Transcript (Including UTRs)
   Position: hg38 chr22:43,110,750-43,129,712 Size: 18,963 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr22:43,124,023-43,129,305 Size: 5,283 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:43,110,750-43,129,712)mRNA (may differ from genome)Protein (160 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BIK_HUMAN
DESCRIPTION: RecName: Full=Bcl-2-interacting killer; AltName: Full=Apoptosis inducer NBK; AltName: Full=BIP1; AltName: Full=BP4;
FUNCTION: Accelerates programmed cell death. Association to the apoptosis repressors Bcl-X(L), BHRF1, Bcl-2 or its adenovirus homolog E1B 19k protein suppresses this death-promoting activity. Does not interact with BAX.
SUBUNIT: Interacts with RHBDL4/RHBDD1.
INTERACTION: P10415:BCL2; NbExp=3; IntAct=EBI-700794, EBI-77694; Q07817:BCL2L1; NbExp=2; IntAct=EBI-700794, EBI-78035; Q07817-1:BCL2L1; NbExp=3; IntAct=EBI-700794, EBI-287195; Q92843:BCL2L2; NbExp=2; IntAct=EBI-700794, EBI-707714;
SUBCELLULAR LOCATION: Endomembrane system; Single-pass membrane protein. Mitochondrion membrane; Single-pass membrane protein (By similarity). Note=Around the nuclear envelope, and in cytoplasmic membranes.
DOMAIN: Intact BH3 motif is required by BIK, BID, BAK, BAD and BAX for their pro-apoptotic activity and for their interaction with anti-apoptotic members of the Bcl-2 family.
PTM: Proteolytically cleaved by RHBDL4/RHBDD1. RHBDL4/RHBDD1- induced cleavage is a necessary step prior its degradation by the proteosome-dependent mechanism.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/bik/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BIK
Diseases sorted by gene-association score: apple allergy (2), wolfram syndrome 2 (1), prostate cancer susceptibility (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.24 RPKM in Minor Salivary Gland
Total median expression: 75.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.5061-0.336 Picture PostScript Text
3' UTR -146.70407-0.360 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024579 - Bcl2-int_killer
IPR020728 - Bcl2_BH3_motif_CS

Pfam Domains:
PF12201 - Bcl2-interacting killer, BH3-domain containing

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2IPE - Model


ModBase Predicted Comparative 3D Structure on Q13323
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006915 apoptotic process
GO:0008584 male gonad development
GO:0032464 positive regulation of protein homooligomerization
GO:0042981 regulation of apoptotic process
GO:0090200 positive regulation of release of cytochrome c from mitochondria

Cellular Component:
GO:0005739 mitochondrion
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031966 mitochondrial membrane


-  Descriptions from all associated GenBank mRNAs
  BC001599 - Homo sapiens BCL2-interacting killer (apoptosis-inducing), mRNA (cDNA clone MGC:1907 IMAGE:3542939), complete cds.
X89986 - H.sapiens mRNA for NBK apoptotic inducer protein.
U49730 - Homo sapiens apoptosis inducer Nbk mRNA, complete cds.
U34584 - Human Bcl-2 interacting killer (BIK) mRNA, complete cds.
JD200143 - Sequence 181167 from Patent EP1572962.
JD405332 - Sequence 386356 from Patent EP1572962.
CR456390 - Homo sapiens BIK full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.BIK.V2).
AB462961 - Synthetic construct DNA, clone: pF1KB8441, Homo sapiens BIK gene for BCL2-interacting killer, without stop codon, in Flexi system.
CR541883 - Homo sapiens full open reading frame cDNA clone RZPDo834C0533D for gene BIK, BCL2-interacting killer (apoptosis-inducing); complete cds, without stopcodon.
CU013236 - Homo sapiens BIK, mRNA (cDNA clone IMAGE:100000016), complete cds, without stop codon, in Gateway system.
BT006728 - Homo sapiens BCL2-interacting killer (apoptosis-inducing) mRNA, complete cds.
DQ890578 - Synthetic construct clone IMAGE:100003208; FLH164096.01X; RZPDo839C08162D BCL2-interacting killer (apoptosis-inducing) (BIK) gene, encodes complete protein.
DQ893738 - Synthetic construct Homo sapiens clone IMAGE:100008198; FLH164092.01L; RZPDo839C08161D BCL2-interacting killer (apoptosis-inducing) (BIK) gene, encodes complete protein.
DQ893745 - Synthetic construct Homo sapiens clone IMAGE:100008205; FLH263660.01L; RZPDo839D04161D BCL2-interacting killer (apoptosis-inducing) (BIK) gene, encodes complete protein.
KJ890768 - Synthetic construct Homo sapiens clone ccsbBroadEn_00162 BIK gene, encodes complete protein.
CR541863 - Homo sapiens full open reading frame cDNA clone RZPDo834G0832D for gene BIK, BCL2-interacting killer (apoptosis-inducing); complete cds, incl. stopcodon.
CU012948 - Homo sapiens BIK, mRNA (cDNA clone IMAGE:100000112), complete cds, with stop codon, in Gateway system.
JD477299 - Sequence 458323 from Patent EP1572962.
JD060036 - Sequence 41060 from Patent EP1572962.
JD158230 - Sequence 139254 from Patent EP1572962.
JD300236 - Sequence 281260 from Patent EP1572962.
JD099250 - Sequence 80274 from Patent EP1572962.
JD453536 - Sequence 434560 from Patent EP1572962.
JD486959 - Sequence 467983 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mitochondriaPathway - Role of Mitochondria in Apoptotic Signaling

-  Other Names for This Gene
  Alternate Gene Symbols: BIK_HUMAN, ENST00000216115.1, ENST00000216115.2, NBK, NM_001197, Q13323, Q16582, Q6FH93, uc003bdk.1, uc003bdk.2, uc003bdk.3, uc003bdk.4
UCSC ID: ENST00000216115.3
RefSeq Accession: NM_001197
Protein: Q13323 (aka BIK_HUMAN)
CCDS: CCDS14044.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.