Human Gene PCNP (ENST00000265260.8) from GENCODE V44
  Description: Homo sapiens PEST proteolytic signal containing nuclear protein (PCNP), transcript variant 12, non-coding RNA. (from RefSeq NR_135227)
Gencode Transcript: ENST00000265260.8
Gencode Gene: ENSG00000081154.12
Transcript (Including UTRs)
   Position: hg38 chr3:101,574,180-101,594,465 Size: 20,286 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr3:101,574,216-101,592,753 Size: 18,538 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:101,574,180-101,594,465)mRNA (may differ from genome)Protein (178 aa)
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HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PCNP_HUMAN
DESCRIPTION: RecName: Full=PEST proteolytic signal-containing nuclear protein; Short=PCNP; Short=PEST-containing nuclear protein;
FUNCTION: May be involved in cell cycle regulation.
SUBUNIT: Interacts with UHRF2/NIRF.
SUBCELLULAR LOCATION: Nucleus.
PTM: Ubiquitinated; mediated by UHRF2 and leading to its subsequent proteasomal degradation.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 63.81 RPKM in Artery - Tibial
Total median expression: 2308.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.1036-0.503 Picture PostScript Text
3' UTR -362.301712-0.212 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8WW12
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007049 cell cycle
GO:0016567 protein ubiquitination
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process

Cellular Component:
GO:0005634 nucleus
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  AK098760 - Homo sapiens cDNA FLJ25894 fis, clone CBR03547.
BC013916 - Homo sapiens PEST proteolytic signal containing nuclear protein, mRNA (cDNA clone MGC:22833 IMAGE:3929908), complete cds.
CR627371 - Homo sapiens mRNA; cDNA DKFZp781I24156 (from clone DKFZp781I24156).
BC022001 - Homo sapiens PEST proteolytic signal containing nuclear protein, mRNA (cDNA clone MGC:26052 IMAGE:4823990), complete cds.
AB037675 - Homo sapiens pcnp mRNA for PEST-containing nuclear protein, complete cds.
AK222978 - Homo sapiens mRNA for PEST-containing nuclear protein variant, clone: HSI03937.
AK025551 - Homo sapiens cDNA: FLJ21898 fis, clone HEP03449.
BC107796 - Homo sapiens PEST proteolytic signal containing nuclear protein, mRNA (cDNA clone IMAGE:6745112).
AK314629 - Homo sapiens cDNA, FLJ95471, Homo sapiens PEST-containing nuclear protein (PCNP), mRNA.
KJ902933 - Synthetic construct Homo sapiens clone ccsbBroadEn_12327 PCNP gene, encodes complete protein.
DQ893953 - Synthetic construct Homo sapiens clone IMAGE:100008413; FLH166023.01L; RZPDo839B1285D PEST proteolytic signal containing nuclear protein (PCNP) gene, encodes complete protein.
AB590038 - Synthetic construct DNA, clone: pFN21AB8118, Homo sapiens PCNP gene for PEST proteolytic signal containing nuclear protein, without stop codon, in Flexi system.
DQ890799 - Synthetic construct clone IMAGE:100003429; FLH166027.01X; RZPDo839B1286D PEST proteolytic signal containing nuclear protein (PCNP) gene, encodes complete protein.
KJ905510 - Synthetic construct Homo sapiens clone ccsbBroadEn_15117 PCNP gene, encodes complete protein.
BX647886 - Homo sapiens mRNA; cDNA DKFZp686G21102 (from clone DKFZp686G21102).
JD330026 - Sequence 311050 from Patent EP1572962.
JD286566 - Sequence 267590 from Patent EP1572962.
JD331488 - Sequence 312512 from Patent EP1572962.
JD347905 - Sequence 328929 from Patent EP1572962.
JD042323 - Sequence 23347 from Patent EP1572962.
JD263029 - Sequence 244053 from Patent EP1572962.
AL110143 - Homo sapiens mRNA; cDNA DKFZp564D0664 (from clone DKFZp564D0664).
JD060805 - Sequence 41829 from Patent EP1572962.
JD091722 - Sequence 72746 from Patent EP1572962.
JD565372 - Sequence 546396 from Patent EP1572962.
JD068391 - Sequence 49415 from Patent EP1572962.
JD240093 - Sequence 221117 from Patent EP1572962.
JD511874 - Sequence 492898 from Patent EP1572962.
JD361626 - Sequence 342650 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBE7, ENST00000265260.1, ENST00000265260.2, ENST00000265260.3, ENST00000265260.4, ENST00000265260.5, ENST00000265260.6, ENST00000265260.7, NR_135227, PCNP_HUMAN, Q6AI44, Q8WW12, Q96CU3, Q9NS81, uc003dva.1, uc003dva.2, uc003dva.3, uc003dva.4, uc003dva.5
UCSC ID: ENST00000265260.8
RefSeq Accession: NM_020357
Protein: Q8WW12 (aka PCNP_HUMAN)
CCDS: CCDS2942.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.