Human Gene NEK11 (ENST00000511262.5) from GENCODE V44
  Description: Homo sapiens NIMA related kinase 11 (NEK11), transcript variant 2, mRNA. (from RefSeq NM_145910)
RefSeq Summary (NM_145910): This gene encodes a member of the never in mitosis gene A family of kinases. The encoded protein localizes to the nucleoli, and may function with NEK2A in the S-phase checkpoint. The encoded protein appears to play roles in DNA replication and response to genotoxic stress. Alternatively spliced transcript variants have been described.[provided by RefSeq, Mar 2009].
Gencode Transcript: ENST00000511262.5
Gencode Gene: ENSG00000114670.14
Transcript (Including UTRs)
   Position: hg38 chr3:131,026,883-131,175,130 Size: 148,248 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg38 chr3:131,029,709-131,174,780 Size: 145,072 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:131,026,883-131,175,130)mRNA (may differ from genome)Protein (470 aa)
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-  Comments and Description Text from UniProtKB
  ID: NEK11_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase Nek11; EC=2.7.11.1; AltName: Full=Never in mitosis A-related kinase 11; Short=NimA-related protein kinase 11;
FUNCTION: Protein kinase which plays an important role in the G2/M checkpoint response to DNA damage. Controls degradation of CDC25A by directly phosphorylating it on residues whose phosphorylation is required for BTRC-mediated polyubiquitination and degradation.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Manganese or magnesium.
ENZYME REGULATION: Autorepressed by intramolecular binding of the C-terminus which dissociates following phosphorylation by NEK2 isoform 1 in G1/S-arrested cells. NEK2 isoform 2 is largely not present in the nucleolus, and does not appear to phosphorylate NEK11. Activated in response to DNA damage. Inhibited by zinc.
SUBUNIT: Interacts with isoform 1 of NEK2.
INTERACTION: P51955:NEK2; NbExp=5; IntAct=EBI-633195, EBI-633182; P51955-1:NEK2; NbExp=2; IntAct=EBI-633195, EBI-687792;
SUBCELLULAR LOCATION: Nucleus. Nucleus, nucleolus. Note=Nuclear during interphase but moves to the polar microtubules during prometaphase and metaphase. Accumulates in the nucleolus in G1/S- arrested cells.
TISSUE SPECIFICITY: Poorly expressed in cerebellum, trachea, lung, appendix, and uterus.
DEVELOPMENTAL STAGE: Predominantly expressed at S/G2/M phase.
PTM: Phosphorylated by NEK2. Phosphorylation at Ser-273 is important for its activation.
SIMILARITY: Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAB15672.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.33 RPKM in Testis
Total median expression: 107.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -89.00293-0.304 Picture PostScript Text
3' UTR -106.60350-0.305 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain

ModBase Predicted Comparative 3D Structure on Q8NG66
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0007049 cell cycle
GO:0016310 phosphorylation
GO:0016572 histone phosphorylation
GO:0031573 intra-S DNA damage checkpoint
GO:0035556 intracellular signal transduction
GO:0044772 mitotic cell cycle phase transition
GO:1901990 regulation of mitotic cell cycle phase transition

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  AK297300 - Homo sapiens cDNA FLJ58744 complete cds, highly similar to Serine/threonine-protein kinase Nek11 (EC 2.7.11.1).
AK123021 - Homo sapiens cDNA FLJ41025 fis, clone BRACE2008594, weakly similar to Human protein serine/threonine kinase stk2 mRNA.
AL833472 - Homo sapiens mRNA; cDNA DKFZp686L0617 (from clone DKFZp686L0617).
AB071997 - Homo sapiens nek11S mRNA for NIMA-related kinase 11S, complete cds.
AB071996 - Homo sapiens nek11L mRNA for NIMA-related kinase 11L, complete cds.
BC026195 - Homo sapiens NIMA (never in mitosis gene a)- related kinase 11, mRNA (cDNA clone IMAGE:4828434), with apparent retained intron.
AK316352 - Homo sapiens cDNA, FLJ79251 complete cds, highly similar to Serine/threonine-protein kinase Nek11 (EC 2.7.11.1).
AK293261 - Homo sapiens cDNA FLJ60411 complete cds, highly similar to Serine/threonine-protein kinase Nek11 (EC2.7.11.1).
BC028587 - Homo sapiens NIMA (never in mitosis gene a)- related kinase 11, mRNA (cDNA clone MGC:27011 IMAGE:4829802), complete cds.
CU688520 - Synthetic construct Homo sapiens gateway clone IMAGE:100019613 5' read NEK11 mRNA.
KJ903243 - Synthetic construct Homo sapiens clone ccsbBroadEn_12637 NEK11 gene, encodes complete protein.
KJ905539 - Synthetic construct Homo sapiens clone ccsbBroadEn_15155 NEK11 gene, encodes complete protein.
AB527977 - Synthetic construct DNA, clone: pF1KE0993, Homo sapiens NEK11 gene for NIMA (never in mitosis gene a)- related kinase 11, without stop codon, in Flexi system.
AK027148 - Homo sapiens cDNA: FLJ23495 fis, clone LNG02228.
JD529959 - Sequence 510983 from Patent EP1572962.
BC009414 - Homo sapiens NIMA (never in mitosis gene a)- related kinase 11, mRNA (cDNA clone IMAGE:3613037), with apparent retained intron.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NHD7, ENST00000511262.1, ENST00000511262.2, ENST00000511262.3, ENST00000511262.4, NEK11_HUMAN, NM_145910, Q5JPC0, Q8NG65, Q8NG66, Q8TBY1, Q9H5F4, uc003enx.1, uc003enx.2, uc003enx.3, uc003enx.4
UCSC ID: ENST00000511262.5
RefSeq Accession: NM_145910
Protein: Q8NG66 (aka NEK11_HUMAN)
CCDS: CCDS46915.1, CCDS82836.1

-  Methods, Credits, and Use Restrictions
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