Human Gene FGFBP2 (ENST00000259989.7) from GENCODE V44
  Description: Homo sapiens fibroblast growth factor binding protein 2 (FGFBP2), mRNA. (from RefSeq NM_031950)
RefSeq Summary (NM_031950): This gene encodes a member of the fibroblast growth factor binding protein family. The encoded protein is a serum protein that is selectively secreted by cytotoxic lymphocytes and may be involved in cytotoxic lymphocyte-mediated immunity. An increase in the amount of gene product may be associated with atopic asthma and mild extrinsic asthma.[provided by RefSeq Staff, Oct 2008].
Gencode Transcript: ENST00000259989.7
Gencode Gene: ENSG00000137441.8
Transcript (Including UTRs)
   Position: hg38 chr4:15,960,245-15,963,175 Size: 2,931 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg38 chr4:15,962,458-15,963,129 Size: 672 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:15,960,245-15,963,175)mRNA (may differ from genome)Protein (223 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FGFP2_HUMAN
DESCRIPTION: RecName: Full=Fibroblast growth factor-binding protein 2; Short=FGF-BP2; Short=FGF-binding protein 2; Short=FGFBP-2; AltName: Full=37 kDa killer-specific secretory protein; Short=Ksp37; AltName: Full=HBp17-related protein; Short=HBp17-RP; Flags: Precursor;
SUBCELLULAR LOCATION: Secreted, extracellular space.
TISSUE SPECIFICITY: Expressed in serum, peripheral leukocytes and cytotoxic T-lymphocytes, but not in granulocytes and monocytes (at protein level).
SIMILARITY: Belongs to the fibroblast growth factor-binding protein family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 82.20 RPKM in Nerve - Tibial
Total median expression: 187.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.7046-0.167 Picture PostScript Text
3' UTR -83.50387-0.216 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010510 - FGF1-bd

Pfam Domains:
PF06473 - FGF binding protein 1 (FGF-BP1)

ModBase Predicted Comparative 3D Structure on Q9BYJ0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0019838 growth factor binding

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  BC025720 - Homo sapiens fibroblast growth factor binding protein 2, mRNA (cDNA clone MGC:34108 IMAGE:5228917), complete cds.
AB021123 - Homo sapiens mRNA for Ksp37, complete cds.
AY358978 - Homo sapiens clone DNA59602 KSP37 (UNQ425) mRNA, complete cds.
JD345000 - Sequence 326024 from Patent EP1572962.
JD156312 - Sequence 137336 from Patent EP1572962.
JD431340 - Sequence 412364 from Patent EP1572962.
JD261789 - Sequence 242813 from Patent EP1572962.
JD250971 - Sequence 231995 from Patent EP1572962.
AF361936 - Homo sapiens HBp17-related protein mRNA, complete cds.
KJ899735 - Synthetic construct Homo sapiens clone ccsbBroadEn_09129 FGFBP2 gene, encodes complete protein.
DQ892062 - Synthetic construct clone IMAGE:100004692; FLH182808.01X; RZPDo839C06140D Ksp37 protein (KSP37) gene, encodes complete protein.
DQ895256 - Synthetic construct Homo sapiens clone IMAGE:100009716; FLH182804.01L; RZPDo839C06139D Ksp37 protein (KSP37) gene, encodes complete protein.
AB529223 - Synthetic construct DNA, clone: pF1KB8765, Homo sapiens FGFBP2 gene for fibroblast growth factor binding protein 2, without stop codon, in Flexi system.
CU693032 - Synthetic construct Homo sapiens gateway clone IMAGE:100016806 5' read FGFBP2 mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BYJ0 (Reactome details) participates in the following event(s):

R-HSA-5656070 FGFBPs bind FGFs
R-HSA-190377 FGFR2b ligand binding and activation
R-HSA-190241 FGFR2 ligand binding and activation
R-HSA-5654738 Signaling by FGFR2
R-HSA-190236 Signaling by FGFR
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000259989.1, ENST00000259989.2, ENST00000259989.3, ENST00000259989.4, ENST00000259989.5, ENST00000259989.6, FGFP2_HUMAN, KSP37, NM_031950, Q9BYJ0, uc003gon.1, uc003gon.2, uc003gon.3, uc003gon.4, uc003gon.5, UNQ425/PRO1065
UCSC ID: ENST00000259989.7
RefSeq Accession: NM_031950
Protein: Q9BYJ0 (aka FGFP2_HUMAN)
CCDS: CCDS3419.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.