Human Gene PI4K2B (ENST00000264864.8) from GENCODE V44
  Description: Homo sapiens phosphatidylinositol 4-kinase type 2 beta (PI4K2B), transcript variant 2, non-coding RNA. (from RefSeq NR_144633)
RefSeq Summary (NM_018323): This gene encodes a member of the type II PI4 kinase protein family. The encoded protein is primarily cytosolic and contributes to overall PI4-kinase activity along with other protein family members. This protein is involved in early T cell activation. [provided by RefSeq, Dec 2016].
Gencode Transcript: ENST00000264864.8
Gencode Gene: ENSG00000038210.14
Transcript (Including UTRs)
   Position: hg38 chr4:25,234,033-25,279,204 Size: 45,172 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg38 chr4:25,234,164-25,277,187 Size: 43,024 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:25,234,033-25,279,204)mRNA (may differ from genome)Protein (481 aa)
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OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: P4K2B_HUMAN
DESCRIPTION: RecName: Full=Phosphatidylinositol 4-kinase type 2-beta; EC=2.7.1.67; AltName: Full=Phosphatidylinositol 4-kinase type II-beta; Short=PI4KII-BETA;
FUNCTION: Together with PI4K2A and the type III PI4Ks (PIK4CA and PIK4CB) it contributes to the overall PI4-kinase activity of the cell. This contribution may be especially significant in plasma membrane, endosomal and Golgi compartments. The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3). Contributes to the production of InsP3 in stimulated cells and is likely to be involved in the regulation of vesicular trafficking.
CATALYTIC ACTIVITY: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 4-phosphate.
ENZYME REGULATION: Recruited and activated by membrane association. Binding to the microsomal membrane has been shown to enhance its activity.
SUBCELLULAR LOCATION: Cytoplasm. Membrane. Note=Mostly cytoplasmic but also found associated with the plasma membrane, the Golgi and endosomes. Compared to PI4K2A, a larger fraction of PI4K2B is cytosolic due to a smaller extent of palmitoylation. Translocates to membranes where it is recruited by PDGF stimulation by a Rac- GTP-dependent mechanism.
TISSUE SPECIFICITY: Widely expressed.
SIMILARITY: Belongs to the PI3/PI4-kinase family. Type II PI4K subfamily.
SIMILARITY: Contains 1 PI3K/PI4K domain.

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.58 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 139.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.30131-0.392 Picture PostScript Text
3' UTR -443.102017-0.220 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000403 - PI3/4_kinase_cat_dom

Pfam Domains:
PF00454 - Phosphatidylinositol 3- and 4-kinase

ModBase Predicted Comparative 3D Structure on Q8TCG2
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologGenome BrowserGenome Browser
Gene Details    Gene Details
Gene Sorter    Gene Sorter
MGIRGDEnsembl WormBaseSGD
Protein SequenceProtein SequenceProtein Sequence Protein SequenceProtein Sequence
AlignmentAlignmentAlignment AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004430 1-phosphatidylinositol 4-kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006661 phosphatidylinositol biosynthetic process
GO:0007030 Golgi organization
GO:0007032 endosome organization
GO:0016310 phosphorylation
GO:0046854 phosphatidylinositol phosphorylation

Cellular Component:
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005802 trans-Golgi network
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0005765 lysosomal membrane


-  Descriptions from all associated GenBank mRNAs
  AK296302 - Homo sapiens cDNA FLJ58191 complete cds, highly similar to Homo sapiens phosphatidylinositol 4-kinase type 2 beta (PI4K2B), mRNA.
BC051749 - Homo sapiens phosphatidylinositol 4-kinase type 2 beta, mRNA (cDNA clone MGC:51774 IMAGE:6050442), complete cds.
AK128622 - Homo sapiens cDNA FLJ46781 fis, clone TRACH3027701, highly similar to Homo sapiens phosphatidylinositol 4-kinase type 2 beta (PI4K2B), mRNA.
AK001967 - Homo sapiens cDNA FLJ11105 fis, clone PLACE1005755.
AY091514 - Homo sapiens phosphatidylinositol 4-kinase type-II beta mRNA, complete cds.
AY065990 - Homo sapiens phosphatidylinositol 4-kinase type-II beta mRNA, complete cds.
JD555255 - Sequence 536279 from Patent EP1572962.
JD385093 - Sequence 366117 from Patent EP1572962.
JD526703 - Sequence 507727 from Patent EP1572962.
JD543756 - Sequence 524780 from Patent EP1572962.
JD106376 - Sequence 87400 from Patent EP1572962.
KJ899114 - Synthetic construct Homo sapiens clone ccsbBroadEn_08508 PI4K2B gene, encodes complete protein.
AF411320 - Homo sapiens type II phosphatidylinositol 4-kinase beta isoform mRNA, complete cds.
AK023186 - Homo sapiens cDNA FLJ13124 fis, clone NT2RP3002861.
JD559094 - Sequence 540118 from Patent EP1572962.
JD285254 - Sequence 266278 from Patent EP1572962.
JD440418 - Sequence 421442 from Patent EP1572962.
JD327919 - Sequence 308943 from Patent EP1572962.
JD559939 - Sequence 540963 from Patent EP1572962.
JD429161 - Sequence 410185 from Patent EP1572962.
BC031014 - Homo sapiens phosphatidylinositol 4-kinase type 2 beta, mRNA (cDNA clone IMAGE:4658045).
JD562449 - Sequence 543473 from Patent EP1572962.
JD202750 - Sequence 183774 from Patent EP1572962.
JD037071 - Sequence 18095 from Patent EP1572962.
JD240495 - Sequence 221519 from Patent EP1572962.
JD409840 - Sequence 390864 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00562 - Inositol phosphate metabolism
hsa01100 - Metabolic pathways
hsa04070 - Phosphatidylinositol signaling system

BioCyc Knowledge Library
PWY-6351 - D-myo-inositol (1,4,5)-trisphosphate biosynthesis
PWY-6352 - 3-phosphoinositide biosynthesis
PWY-6371 - superpathway of inositol phosphate compounds

Reactome (by CSHL, EBI, and GO)

Protein Q8TCG2 (Reactome details) participates in the following event(s):

R-HSA-1675780 PI is phosphorylated to PI4P by PI4K2A/B at the plasma membrane
R-HSA-1675974 PI is phosphorylated to PI4P by PI4K2A/B at the early endosome membrane
R-HSA-1676185 PI is phosphorylated to PI4P by PI4KA/2A/2B at the Golgi membrane
R-HSA-1675813 PI is phosphorylated to PI4P by PI4KA/2B at the ER membrane
R-HSA-1660499 Synthesis of PIPs at the plasma membrane
R-HSA-1660516 Synthesis of PIPs at the early endosome membrane
R-HSA-1660514 Synthesis of PIPs at the Golgi membrane
R-HSA-1483248 Synthesis of PIPs at the ER membrane
R-HSA-1483255 PI Metabolism
R-HSA-1483257 Phospholipid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000264864.1, ENST00000264864.2, ENST00000264864.3, ENST00000264864.4, ENST00000264864.5, ENST00000264864.6, ENST00000264864.7, NR_144633, P4K2B_HUMAN, Q8TCG2, Q9NUW2, uc003grk.1, uc003grk.2, uc003grk.3, uc003grk.4
UCSC ID: ENST00000264864.8
RefSeq Accession: NM_018323
Protein: Q8TCG2 (aka P4K2B_HUMAN)
CCDS: CCDS3433.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.