Human Gene LOC285577 (uc003jdd.3) Description and Page Index
  Description: Homo sapiens uncharacterized LOC285577 (LOC285577), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:3,417,266-3,536,208 Size: 118,943 Total Exon Count: 5 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:3,417,266-3,536,208)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.71 RPKM in Testis
Total median expression: 1.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC035019 - Homo sapiens cDNA clone IMAGE:4823480.
JD094011 - Sequence 75035 from Patent EP1572962.
JD416175 - Sequence 397199 from Patent EP1572962.
JD440436 - Sequence 421460 from Patent EP1572962.
JD197097 - Sequence 178121 from Patent EP1572962.
JD248977 - Sequence 230001 from Patent EP1572962.
JD383085 - Sequence 364109 from Patent EP1572962.
JD484770 - Sequence 465794 from Patent EP1572962.
JD049710 - Sequence 30734 from Patent EP1572962.
JD413859 - Sequence 394883 from Patent EP1572962.
JD363127 - Sequence 344151 from Patent EP1572962.
JD078285 - Sequence 59309 from Patent EP1572962.
JD446215 - Sequence 427239 from Patent EP1572962.
JD284639 - Sequence 265663 from Patent EP1572962.
JD273045 - Sequence 254069 from Patent EP1572962.
JD480913 - Sequence 461937 from Patent EP1572962.
JD428525 - Sequence 409549 from Patent EP1572962.
JD224546 - Sequence 205570 from Patent EP1572962.
JD447749 - Sequence 428773 from Patent EP1572962.
JD097503 - Sequence 78527 from Patent EP1572962.
JD315507 - Sequence 296531 from Patent EP1572962.
JD551993 - Sequence 533017 from Patent EP1572962.
JD220137 - Sequence 201161 from Patent EP1572962.
JD427271 - Sequence 408295 from Patent EP1572962.
JD111853 - Sequence 92877 from Patent EP1572962.
JD052678 - Sequence 33702 from Patent EP1572962.
JD325760 - Sequence 306784 from Patent EP1572962.
JD427608 - Sequence 408632 from Patent EP1572962.
JD406632 - Sequence 387656 from Patent EP1572962.
JD282140 - Sequence 263164 from Patent EP1572962.
JD362424 - Sequence 343448 from Patent EP1572962.
JD463648 - Sequence 444672 from Patent EP1572962.
JD427380 - Sequence 408404 from Patent EP1572962.
JD219610 - Sequence 200634 from Patent EP1572962.
JD457915 - Sequence 438939 from Patent EP1572962.
JD171777 - Sequence 152801 from Patent EP1572962.
BC110532 - Homo sapiens cDNA clone IMAGE:40035067.
BC122538 - Homo sapiens cDNA clone IMAGE:40035073.
JD122890 - Sequence 103914 from Patent EP1572962.
JD085228 - Sequence 66252 from Patent EP1572962.
JD555490 - Sequence 536514 from Patent EP1572962.
JD147553 - Sequence 128577 from Patent EP1572962.
JD290548 - Sequence 271572 from Patent EP1572962.
JD540152 - Sequence 521176 from Patent EP1572962.
JD526556 - Sequence 507580 from Patent EP1572962.
JD449574 - Sequence 430598 from Patent EP1572962.
JD079255 - Sequence 60279 from Patent EP1572962.
JD423200 - Sequence 404224 from Patent EP1572962.
JD127786 - Sequence 108810 from Patent EP1572962.
JD314793 - Sequence 295817 from Patent EP1572962.
JD060480 - Sequence 41504 from Patent EP1572962.
JD100713 - Sequence 81737 from Patent EP1572962.
JD047338 - Sequence 28362 from Patent EP1572962.
JD274011 - Sequence 255035 from Patent EP1572962.
JD436894 - Sequence 417918 from Patent EP1572962.
JD134213 - Sequence 115237 from Patent EP1572962.
JD189628 - Sequence 170652 from Patent EP1572962.
JD484832 - Sequence 465856 from Patent EP1572962.
JD422549 - Sequence 403573 from Patent EP1572962.
JD350230 - Sequence 331254 from Patent EP1572962.
JD131250 - Sequence 112274 from Patent EP1572962.
JD439865 - Sequence 420889 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033898
UCSC ID: uc003jdd.3
RefSeq Accession: NR_033898

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033898.1
exon count: 5CDS single in 3' UTR: no RNA size: 3214
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 190.00frame shift in genome: no % Coverage: 99.53
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.