Human Gene DUSP1 (ENST00000239223.4) from GENCODE V44
  Description: Homo sapiens dual specificity phosphatase 1 (DUSP1), mRNA. (from RefSeq NM_004417)
RefSeq Summary (NM_004417): The protein encoded by this gene is a phosphatase with dual specificity for tyrosine and threonine. The encoded protein can dephosphorylate MAP kinase MAPK1/ERK2, which results in its involvement in several cellular processes. This protein appears to play an important role in the human cellular response to environmental stress as well as in the negative regulation of cellular proliferation. Finally, the encoded protein can make some solid tumors resistant to both chemotherapy and radiotherapy, making it a target for cancer therapy. [provided by RefSeq, Aug 2017].
Gencode Transcript: ENST00000239223.4
Gencode Gene: ENSG00000120129.6
Transcript (Including UTRs)
   Position: hg38 chr5:172,768,096-172,771,195 Size: 3,100 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg38 chr5:172,768,762-172,770,952 Size: 2,191 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:172,768,096-172,771,195)mRNA (may differ from genome)Protein (367 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DUS1_HUMAN
DESCRIPTION: RecName: Full=Dual specificity protein phosphatase 1; EC=3.1.3.16; EC=3.1.3.48; AltName: Full=Dual specificity protein phosphatase hVH1; AltName: Full=Mitogen-activated protein kinase phosphatase 1; Short=MAP kinase phosphatase 1; Short=MKP-1; AltName: Full=Protein-tyrosine phosphatase CL100;
FUNCTION: Dual specificity phosphatase that dephosphorylates MAP kinase MAPK1/ERK2 on both 'Thr-183' and 'Tyr-185'.
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
INTERACTION: P28482:MAPK1; NbExp=3; IntAct=EBI-975493, EBI-959949; Q13309:SKP2; NbExp=3; IntAct=EBI-975493, EBI-456291; P0CG47:UBB; NbExp=2; IntAct=EBI-975493, EBI-413034;
TISSUE SPECIFICITY: Expressed at high levels in the lung, liver placenta and pancreas. Moderate levels seen in the heart and skeletal muscle. Lower levels found in the brain and kidney.
INDUCTION: By oxidative stress and heat shock.
PTM: Phosphorylation at Ser-359 and Ser-364 by MAPK1/ERK2 and MAPK3/ERK1 reduces its rate of degradation (By similarity).
SIMILARITY: Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily.
SIMILARITY: Contains 1 rhodanese domain.
SIMILARITY: Contains 1 tyrosine-protein phosphatase domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/dusp1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DUSP1
Diseases sorted by gene-association score: multiple cranial nerve palsy (6), amyotrophic lateral sclerosis 9 (5), amyotrophic lateral sclerosis 7 (5), glossopharyngeal nerve disease (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 656.86 RPKM in Fallopian Tube
Total median expression: 11912.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -99.80243-0.411 Picture PostScript Text
3' UTR -183.10666-0.275 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020417 - Atypical_DUSP
IPR000340 - Dual-sp_phosphatase_cat-dom
IPR020422 - Dual-sp_phosphatase_subgr_cat
IPR024950 - DUSP
IPR008343 - MKP
IPR001763 - Rhodanese-like_dom
IPR000387 - Tyr/Dual-specificity_Pase
IPR016130 - Tyr_Pase_AS

Pfam Domains:
PF00782 - Dual specificity phosphatase, catalytic domain
PF00581 - Rhodanese-like domain

ModBase Predicted Comparative 3D Structure on P28562
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0004726 non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 protein binding
GO:0008138 protein tyrosine/serine/threonine phosphatase activity
GO:0008330 protein tyrosine/threonine phosphatase activity
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity
GO:0019838 growth factor binding

Biological Process:
GO:0000188 inactivation of MAPK activity
GO:0001706 endoderm formation
GO:0006470 protein dephosphorylation
GO:0006979 response to oxidative stress
GO:0007049 cell cycle
GO:0008285 negative regulation of cell proliferation
GO:0009416 response to light stimulus
GO:0010033 response to organic substance
GO:0016311 dephosphorylation
GO:0032355 response to estradiol
GO:0032526 response to retinoic acid
GO:0032870 cellular response to hormone stimulus
GO:0033574 response to testosterone
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0035556 intracellular signal transduction
GO:0035970 peptidyl-threonine dephosphorylation
GO:0042542 response to hydrogen peroxide
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043407 negative regulation of MAP kinase activity
GO:0043409 negative regulation of MAPK cascade
GO:0051384 response to glucocorticoid
GO:0051447 negative regulation of meiotic cell cycle
GO:0051591 response to cAMP
GO:0051592 response to calcium ion
GO:0070262 peptidyl-serine dephosphorylation
GO:0070373 negative regulation of ERK1 and ERK2 cascade
GO:0071850 mitotic cell cycle arrest
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint
GO:2000279 negative regulation of DNA biosynthetic process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC022463 - Homo sapiens dual specificity phosphatase 1, mRNA (cDNA clone MGC:26153 IMAGE:4794895), complete cds.
AJ227912 - Homo sapiens partial mRNA; ID YG39-3, YG81-1A, ED166-8C.
AK127679 - Homo sapiens cDNA FLJ45777 fis, clone NETRP2004385, highly similar to Dual specificity protein phosphatase 1 (EC 3.1.3.48).
X68277 - H.sapiens CL 100 mRNA for protein tyrosine phosphatase.
JD439999 - Sequence 421023 from Patent EP1572962.
JD556689 - Sequence 537713 from Patent EP1572962.
AK300487 - Homo sapiens cDNA FLJ53922 complete cds, highly similar to Dual specificity protein phosphatase 1 (EC 3.1.3.48).
JD046792 - Sequence 27816 from Patent EP1572962.
JD314264 - Sequence 295288 from Patent EP1572962.
JD049224 - Sequence 30248 from Patent EP1572962.
AK298047 - Homo sapiens cDNA FLJ59221 complete cds, highly similar to Dual specificity protein phosphatase 1 (EC 3.1.3.48).
JD301171 - Sequence 282195 from Patent EP1572962.
AK316321 - Homo sapiens cDNA, FLJ79220 complete cds, highly similar to Dual specificity protein phosphatase 1 (EC3.1.3.48).
JD303007 - Sequence 284031 from Patent EP1572962.
AK298658 - Homo sapiens cDNA FLJ51038 complete cds, highly similar to Dual specificity protein phosphatase 1 (EC3.1.3.48).
AK304475 - Homo sapiens cDNA FLJ51202 complete cds, highly similar to Dual specificity protein phosphatase 1 (EC 3.1.3.48).
JD289293 - Sequence 270317 from Patent EP1572962.
JD526955 - Sequence 507979 from Patent EP1572962.
AK299391 - Homo sapiens cDNA FLJ60839 complete cds, highly similar to Dual specificity protein phosphatase 1 (EC 3.1.3.48).
AB463583 - Synthetic construct DNA, clone: pF1KB6533, Homo sapiens DUSP1 gene for dual specificity phosphatase 1, without stop codon, in Flexi system.
JD199549 - Sequence 180573 from Patent EP1572962.
JD069190 - Sequence 50214 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_tnfr2Pathway - TNFR2 Signaling Pathway
h_dspPathway - Regulation of MAP Kinase Pathways Through Dual Specificity Phosphatases
h_cd40Pathway - CD40L Signaling Pathway
h_nthiPathway - NFkB activation by Nontypeable Hemophilus influenzae
h_pparaPathway - Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha)

Reactome (by CSHL, EBI, and GO)

Protein P28562 (Reactome details) participates in the following event(s):

R-HSA-5675373 Nuclear DUSPs dephosphorylate MAPKs
R-HSA-112409 RAF-independent MAPK1/3 activation
R-HSA-5675221 Negative regulation of MAPK pathway
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: CL100, D3DQL9, DUS1_HUMAN, ENST00000239223.1, ENST00000239223.2, ENST00000239223.3, MKP1, NM_004417, P28562, PTPN10, Q2V508, uc003mbv.1, uc003mbv.2, uc003mbv.3, uc003mbv.4, VH1
UCSC ID: ENST00000239223.4
RefSeq Accession: NM_004417
Protein: P28562 (aka DUS1_HUMAN)
CCDS: CCDS4380.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.