Human Gene PKIB (ENST00000392491.6) from GENCODE V44
  Description: Homo sapiens cAMP-dependent protein kinase inhibitor beta (PKIB), transcript variant 2, mRNA. (from RefSeq NM_181794)
RefSeq Summary (NM_181794): This gene encodes a member of the cAMP-dependent protein kinase inhibitor family. The encoded protein may play a role in the protein kinase A (PKA) pathway by interacting with the catalytic subunit of PKA, and overexpression of this gene may play a role in prostate cancer. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012].
Gencode Transcript: ENST00000392491.6
Gencode Gene: ENSG00000135549.16
Transcript (Including UTRs)
   Position: hg38 chr6:122,471,931-122,725,890 Size: 253,960 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg38 chr6:122,717,795-122,725,195 Size: 7,401 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:122,471,931-122,725,890)mRNA (may differ from genome)Protein (78 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IPKB_HUMAN
DESCRIPTION: RecName: Full=cAMP-dependent protein kinase inhibitor beta; Short=PKI-beta;
FUNCTION: Extremely potent competitive inhibitor of cAMP-dependent protein kinase activity, this protein interacts with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains (By similarity).
SIMILARITY: Belongs to the PKI family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 71.77 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 193.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -97.40447-0.218 Picture PostScript Text
3' UTR -149.70695-0.215 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004171 - cAMP_dep_PKI

Pfam Domains:
PF02827 - cAMP-dependent protein kinase inhibitor

ModBase Predicted Comparative 3D Structure on Q9C010
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004860 protein kinase inhibitor activity
GO:0004862 cAMP-dependent protein kinase inhibitor activity

Biological Process:
GO:0006469 negative regulation of protein kinase activity
GO:0032212 positive regulation of telomere maintenance via telomerase
GO:0051973 positive regulation of telomerase activity
GO:1904355 positive regulation of telomere capping
GO:2000480 negative regulation of cAMP-dependent protein kinase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AJ420562 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1525273.
BC093027 - Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor beta, mRNA (cDNA clone MGC:110924 IMAGE:30341475), complete cds.
BC036011 - Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor beta, mRNA (cDNA clone MGC:32895 IMAGE:4768945), complete cds.
AF087873 - Homo sapiens protein kinase inhibitor mRNA, complete cds.
AK315151 - Homo sapiens cDNA, FLJ96122, Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor beta (PKIB), mRNA.
AK074397 - Homo sapiens cDNA FLJ23817 fis, clone HSI07950.
CR749456 - Homo sapiens mRNA; cDNA DKFZp781K1114 (from clone DKFZp781K1114).
JD102226 - Sequence 83250 from Patent EP1572962.
AF225513 - Homo sapiens cAMP-dependent protein kinase inhibitor beta mRNA, complete cds.
AB464674 - Synthetic construct DNA, clone: pF1KB8855, Homo sapiens PKIB gene for protein kinase (cAMP-dependent, catalytic) inhibitor beta, without stop codon, in Flexi system.
HQ257931 - Synthetic construct Homo sapiens clone IMAGE:100072240 protein kinase (cAMP-dependent, catalytic) inhibitor beta (PKIB), transcript variant 1 (PKIB) gene, encodes complete protein.
JD037994 - Sequence 19018 from Patent EP1572962.
JD062977 - Sequence 44001 from Patent EP1572962.
JD302954 - Sequence 283978 from Patent EP1572962.
JD503418 - Sequence 484442 from Patent EP1572962.
JD265049 - Sequence 246073 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RCK2, ENST00000392491.1, ENST00000392491.2, ENST00000392491.3, ENST00000392491.4, ENST00000392491.5, IPKB_HUMAN, NM_181794, PRKACN2, Q567T9, Q9C010, uc003pyz.1, uc003pyz.2, uc003pyz.3, uc003pyz.4
UCSC ID: ENST00000392491.6
RefSeq Accession: NM_181794
Protein: Q9C010 (aka IPKB_HUMAN)
CCDS: CCDS5126.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.