Human Gene AIMP2 (ENST00000223029.8) from GENCODE V44
  Description: Homo sapiens aminoacyl tRNA synthetase complex interacting multifunctional protein 2 (AIMP2), transcript variant 1, mRNA. (from RefSeq NM_006303)
RefSeq Summary (NM_006303): The protein encoded by this gene is part of the aminoacyl-tRNA synthetase complex, which contains nine different aminoacyl-tRNA synthetases and three non-enzymatic factors. The encoded protein is one of the non-enzymatic factors and is required for assembly and stability of the complex. [provided by RefSeq, May 2016].
Gencode Transcript: ENST00000223029.8
Gencode Gene: ENSG00000106305.10
Transcript (Including UTRs)
   Position: hg38 chr7:6,009,272-6,023,834 Size: 14,563 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg38 chr7:6,009,364-6,023,691 Size: 14,328 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:6,009,272-6,023,834)mRNA (may differ from genome)Protein (320 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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GeneCardsHGNCHPRDLynxMalacardsMGI
myGene2neXtProtOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AIMP2_HUMAN
DESCRIPTION: RecName: Full=Aminoacyl tRNA synthase complex-interacting multifunctional protein 2; AltName: Full=Multisynthase complex auxiliary component p38; AltName: Full=Protein JTV-1;
FUNCTION: Required for assembly and stability of the aminoacyl- tRNA synthase complex. Mediates ubiquitination and degradation of FUBP1, a transcriptional activator of MYC, leading to MYC down- regulation which is required for aveolar type II cell differentiation. Blocks MDM2-mediated ubiquitination and degradation of p53/TP53. Functions as a proapoptotic factor.
SUBUNIT: Component of the aminoacyl-tRNA synthase complex which is comprised of a bifunctional glutamyl-prolyl-tRNA synthase, the monospecific isoleucyl, leucyl, glutaminyl, methionyl, lysyl, arginyl and aspartyl-tRNA synthases, and three auxiliary proteins, EEF1E1/p18, AIMP2/p38 and AIMP1/p43. Binds FUBP1 (via C-terminus). Interacts in both its unphosphorylated and phosphorylated forms with p53/TP53 (via N-terminus) in the nucleus following UV irradiation. Interacts (via N-terminus) with KARS and PARK2/parkin (via first RING-type domain).
INTERACTION: Q0VDD7:C19orf57; NbExp=4; IntAct=EBI-745226, EBI-741210; P04591:gag (xeno); NbExp=3; IntAct=EBI-745226, EBI-6179719;
SUBCELLULAR LOCATION: Cytoplasm, cytosol (By similarity). Nucleus (By similarity). Note=Following DNA damage, dissociates from the aminoacyl-tRNA synthase complex and translocates from the cytoplasm to the nucleus (By similarity).
PTM: Phosphorylated on serine residues in response to UV irradiation (By similarity).
PTM: Ubiquitinated by PARK2, leading to its degradation by the proteasome. Mutant PARK2 fails to ubiquitinate AIMP2 efficiently, allowing its accumulation which may contribute to neurodegeneration associated with Parkinson disease.
MISCELLANEOUS: Accumulates in brains affected by autosomal- recessive juvenile parkinsonism, idiopathic Parkinson disease and diffuse Lewy body disease.
SIMILARITY: Contains 1 GST C-terminal domain.
SEQUENCE CAUTION: Sequence=AAC50391.1; Type=Frameshift; Positions=312;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.91 RPKM in Muscle - Skeletal
Total median expression: 328.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -35.3092-0.384 Picture PostScript Text
3' UTR -27.70143-0.194 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010987 - Glutathione-S-Trfase_C-like

ModBase Predicted Comparative 3D Structure on Q13155
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0032947 protein complex scaffold

Biological Process:
GO:0006412 translation
GO:0006418 tRNA aminoacylation for protein translation
GO:0006915 apoptotic process
GO:0007275 multicellular organism development
GO:0008285 negative regulation of cell proliferation
GO:0030154 cell differentiation
GO:0031398 positive regulation of protein ubiquitination
GO:0060510 Type II pneumocyte differentiation
GO:0065003 macromolecular complex assembly
GO:1901216 positive regulation of neuron death
GO:1903632 positive regulation of aminoacyl-tRNA ligase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0017101 aminoacyl-tRNA synthetase multienzyme complex


-  Descriptions from all associated GenBank mRNAs
  AK313037 - Homo sapiens cDNA, FLJ93510, highly similar to Homo sapiens JTV1 gene (JTV1), mRNA.
U24169 - Human JTV-1 (JTV-1) mRNA, complete cds.
BC013630 - Homo sapiens JTV1 gene, mRNA (cDNA clone MGC:17435 IMAGE:3446074), complete cds.
BC002853 - Homo sapiens JTV1 gene, mRNA (cDNA clone MGC:3543 IMAGE:3634481), complete cds.
BC010156 - Homo sapiens JTV1 gene, mRNA (cDNA clone MGC:19747 IMAGE:3619946), complete cds.
JD195704 - Sequence 176728 from Patent EP1572962.
AB590717 - Synthetic construct DNA, clone: pFN21AE1805, Homo sapiens AIMP2 gene for aminoacyl tRNA synthetase complex-interacting multifunctional protein 2, without stop codon, in Flexi system.
CU678244 - Synthetic construct Homo sapiens gateway clone IMAGE:100017022 5' read JTV1 mRNA.
CU680644 - Synthetic construct Homo sapiens gateway clone IMAGE:100018901 5' read JTV1 mRNA.
KJ892454 - Synthetic construct Homo sapiens clone ccsbBroadEn_01848 AIMP2 gene, encodes complete protein.
KJ897796 - Synthetic construct Homo sapiens clone ccsbBroadEn_07190 AIMP2 gene, encodes complete protein.
JD020102 - Sequence 1126 from Patent EP1572962.
JD033827 - Sequence 14851 from Patent EP1572962.
AF116615 - Homo sapiens PRO0992 mRNA, complete cds.
JD308585 - Sequence 289609 from Patent EP1572962.
JD075539 - Sequence 56563 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13155 (Reactome details) participates in the following event(s):

R-HSA-380008 lysine + tRNA(Lys) + ATP => Lys-tRNA(Lys) + AMP + pyrophosphate
R-HSA-379974 leucine + tRNA(Leu) + ATP => Leu-tRNA(Leu) + AMP + pyrophosphate
R-HSA-379861 glutamate + tRNA(Glu) + ATP => Glu-tRNA(Glu) + AMP + pyrophosphate
R-HSA-379893 isoleucine + tRNA(Ile) + ATP => Ile-tRNA(Ile) + AMP + pyrophosphate
R-HSA-379865 proline + tRNA(Pro) + ATP => Pro-tRNA(Pro) + AMP + pyrophosphate
R-HSA-379994 methionine + tRNA(Met) + ATP => Met-tRNA(Met) + AMP + pyrophosphate
R-HSA-379867 aspartate + tRNA(Asp) + ATP => Asp-tRNA(Asp) + AMP + pyrophosphate
R-HSA-379982 glutamine + tRNA(Gln) + ATP => Gln-tRNA(Gln) + AMP + pyrophosphate
R-HSA-379993 arginine + tRNA(Arg) + ATP => Arg-tRNA(Arg) + AMP + pyrophosphate
R-HSA-2408546 tRNA(Met) is selenomethionylated to SeMet-tRNA(Met) by multisynthetase complex
R-HSA-379716 Cytosolic tRNA aminoacylation
R-HSA-2408517 SeMet incorporation into proteins
R-HSA-379724 tRNA Aminoacylation
R-HSA-2408522 Selenoamino acid metabolism
R-HSA-72766 Translation
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-392499 Metabolism of proteins
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: AIMP2_HUMAN, ENST00000223029.1, ENST00000223029.2, ENST00000223029.3, ENST00000223029.4, ENST00000223029.5, ENST00000223029.6, ENST00000223029.7, JTV1, NM_006303, PRO0992, Q13155, Q75MR1, Q96CZ5, Q9P1L2, uc003spo.1, uc003spo.2, uc003spo.3, uc003spo.4, uc003spo.5
UCSC ID: ENST00000223029.8
RefSeq Accession: NM_006303
Protein: Q13155 (aka AIMP2_HUMAN)
CCDS: CCDS5344.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.