Description: Homo sapiens family with sequence similarity 200 member A (FAM200A), mRNA. (from RefSeq NM_145111) RefSeq Summary (NM_145111): This gene encodes a protein of unknown function. The protein is weakly similar to transposase-like proteins in human and mouse. [provided by RefSeq, Jul 2008]. Gencode Transcript: ENST00000449309.2 Gencode Gene: ENSG00000221909.3 Transcript (Including UTRs) Position: hg38 chr7:99,546,300-99,552,114 Size: 5,815 Total Exon Count: 2 Strand: - Coding Region Position: hg38 chr7:99,546,686-99,548,407 Size: 1,722 Coding Exon Count: 1
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Pfam Domains: PF14291 - Domain of unknown function (DUF4371)
ModBase Predicted Comparative 3D Structure on Q8TCP9
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Molecular Function: GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding GO:0003677 DNA binding GO:0005515 protein binding
Biological Process: GO:0006357 regulation of transcription from RNA polymerase II promoter