Human Gene TCAF1 (ENST00000479870.6) from GENCODE V44
Description: Homo sapiens TRPM8 channel associated factor 1 (TCAF1), transcript variant 1, mRNA. (from RefSeq NM_014719)
Gencode Transcript: ENST00000479870.6
Gencode Gene: ENSG00000198420.10
Transcript (Including UTRs)
Position: hg38 chr7:143,851,375-143,902,176 Size: 50,802 Total Exon Count: 9 Strand: -
Coding Region
Position: hg38 chr7:143,854,133-143,876,608 Size: 22,476 Coding Exon Count: 8
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: F115A_HUMAN
DESCRIPTION: RecName: Full=Protein FAM115A;
SIMILARITY: Belongs to the FAM115 family.SEQUENCE CAUTION: Sequence=BAA34458.2; Type=Erroneous initiation;
Primer design for this transcript
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on Q9Y4C2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF207110 - JP 2014500723-A/14613: Polycomb-Associated Non-Coding RNAs.MA442687 - JP 2018138019-A/14613: Polycomb-Associated Non-Coding RNAs.BC039457 - Homo sapiens cDNA clone IMAGE:5312122.LF361996 - JP 2014500723-A/169499: Polycomb-Associated Non-Coding RNAs.MA597573 - JP 2018138019-A/169499: Polycomb-Associated Non-Coding RNAs.LF361997 - JP 2014500723-A/169500: Polycomb-Associated Non-Coding RNAs.MA597574 - JP 2018138019-A/169500: Polycomb-Associated Non-Coding RNAs.LF361998 - JP 2014500723-A/169501: Polycomb-Associated Non-Coding RNAs.MA597575 - JP 2018138019-A/169501: Polycomb-Associated Non-Coding RNAs.AF086218 - Homo sapiens full length insert cDNA clone ZC65G07.DQ786304 - Homo sapiens clone HLS_IMAGE_753138 mRNA sequence.DQ786274 - Homo sapiens clone HLS_IMAGE_327228 mRNA sequence.LF361999 - JP 2014500723-A/169502: Polycomb-Associated Non-Coding RNAs.MA597576 - JP 2018138019-A/169502: Polycomb-Associated Non-Coding RNAs.JD021952 - Sequence 2976 from Patent EP1572962.JD030682 - Sequence 11706 from Patent EP1572962.LF362000 - JP 2014500723-A/169503: Polycomb-Associated Non-Coding RNAs.MA597577 - JP 2018138019-A/169503: Polycomb-Associated Non-Coding RNAs.JD035782 - Sequence 16806 from Patent EP1572962.LF362001 - JP 2014500723-A/169504: Polycomb-Associated Non-Coding RNAs.MA597578 - JP 2018138019-A/169504: Polycomb-Associated Non-Coding RNAs.LF362002 - JP 2014500723-A/169505: Polycomb-Associated Non-Coding RNAs.MA597579 - JP 2018138019-A/169505: Polycomb-Associated Non-Coding RNAs.JD024918 - Sequence 5942 from Patent EP1572962.JD030659 - Sequence 11683 from Patent EP1572962.LF362003 - JP 2014500723-A/169506: Polycomb-Associated Non-Coding RNAs.MA597580 - JP 2018138019-A/169506: Polycomb-Associated Non-Coding RNAs.AB018281 - Homo sapiens KIAA0738 mRNA for KIAA0738 protein.AK001640 - Homo sapiens cDNA FLJ10778 fis, clone NT2RP4000360, highly similar to Homo sapiens mRNA for KIAA0738 protein.JD434076 - Sequence 415100 from Patent EP1572962.JD239029 - Sequence 220053 from Patent EP1572962.JD038304 - Sequence 19328 from Patent EP1572962.JD442749 - Sequence 423773 from Patent EP1572962.JD442748 - Sequence 423772 from Patent EP1572962.JD045236 - Sequence 26260 from Patent EP1572962.JD388466 - Sequence 369490 from Patent EP1572962.JD457201 - Sequence 438225 from Patent EP1572962.JD558806 - Sequence 539830 from Patent EP1572962.JD430984 - Sequence 412008 from Patent EP1572962.JD326927 - Sequence 307951 from Patent EP1572962.JD373409 - Sequence 354433 from Patent EP1572962.JD388465 - Sequence 369489 from Patent EP1572962.JD147136 - Sequence 128160 from Patent EP1572962.JD530631 - Sequence 511655 from Patent EP1572962.JD498105 - Sequence 479129 from Patent EP1572962.JD343982 - Sequence 325006 from Patent EP1572962.JD294069 - Sequence 275093 from Patent EP1572962.JD199024 - Sequence 180048 from Patent EP1572962.JD327186 - Sequence 308210 from Patent EP1572962.JD241736 - Sequence 222760 from Patent EP1572962.JD286602 - Sequence 267626 from Patent EP1572962.JD063421 - Sequence 44445 from Patent EP1572962.JD356100 - Sequence 337124 from Patent EP1572962.JD066355 - Sequence 47379 from Patent EP1572962.JD486684 - Sequence 467708 from Patent EP1572962.AK291605 - Homo sapiens cDNA FLJ76313 complete cds.JD315129 - Sequence 296153 from Patent EP1572962.JD102424 - Sequence 83448 from Patent EP1572962.AK299911 - Homo sapiens cDNA FLJ58406 complete cds, weakly similar to Mus musculus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.JD253211 - Sequence 234235 from Patent EP1572962.JD333721 - Sequence 314745 from Patent EP1572962.JD236952 - Sequence 217976 from Patent EP1572962.JD073163 - Sequence 54187 from Patent EP1572962.JD133584 - Sequence 114608 from Patent EP1572962.JD099672 - Sequence 80696 from Patent EP1572962.JD099671 - Sequence 80695 from Patent EP1572962.AK294312 - Homo sapiens cDNA FLJ56782 complete cds, moderately similar to Mus musculus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.LF362004 - JP 2014500723-A/169507: Polycomb-Associated Non-Coding RNAs.MA597581 - JP 2018138019-A/169507: Polycomb-Associated Non-Coding RNAs.JD341212 - Sequence 322236 from Patent EP1572962.BC000609 - Homo sapiens family with sequence similarity 115, member A, mRNA (cDNA clone MGC:1890 IMAGE:3346754), complete cds.AB383971 - Synthetic construct DNA, clone: pF1KSDA0738, Homo sapiens FAM115A gene for FAM115A protein, complete cds, without stop codon, in Flexi system.LF362005 - JP 2014500723-A/169508: Polycomb-Associated Non-Coding RNAs.MA597582 - JP 2018138019-A/169508: Polycomb-Associated Non-Coding RNAs.LF362006 - JP 2014500723-A/169509: Polycomb-Associated Non-Coding RNAs.MA597583 - JP 2018138019-A/169509: Polycomb-Associated Non-Coding RNAs.LF362008 - JP 2014500723-A/169511: Polycomb-Associated Non-Coding RNAs.MA597585 - JP 2018138019-A/169511: Polycomb-Associated Non-Coding RNAs.JD108243 - Sequence 89267 from Patent EP1572962.JD462051 - Sequence 443075 from Patent EP1572962.JD157323 - Sequence 138347 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A8K6E0, ENST00000479870.1, ENST00000479870.2, ENST00000479870.3, ENST00000479870.4, ENST00000479870.5, F115A_HUMAN, FAM115A, KIAA0738, NM_014719, Q75KM8, Q75KM9, Q7L665, Q9BW63, Q9Y4C2, uc003wdo.1, uc003wdo.2, uc003wdo.3, uc003wdo.4UCSC ID: ENST00000479870.6RefSeq Accession: NM_014719
Protein: Q9Y4C2
(aka F115A_HUMAN)
CCDS: CCDS56514.1 , CCDS5886.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.