Human Gene DUSP4 (ENST00000240100.7) from GENCODE V44
  Description: Homo sapiens dual specificity phosphatase 4 (DUSP4), transcript variant 1, mRNA. (from RefSeq NM_001394)
RefSeq Summary (NM_001394): The protein encoded by this gene is a member of the dual specificity protein phosphatase subfamily. These phosphatases inactivate their target kinases by dephosphorylating both the phosphoserine/threonine and phosphotyrosine residues. They negatively regulate members of the mitogen-activated protein (MAP) kinase superfamily (MAPK/ERK, SAPK/JNK, p38), which are associated with cellular proliferation and differentiation. Different members of the family of dual specificity phosphatases show distinct substrate specificities for various MAP kinases, different tissue distribution and subcellular localization, and different modes of inducibility of their expression by extracellular stimuli. This gene product inactivates ERK1, ERK2 and JNK, is expressed in a variety of tissues, and is localized in the nucleus. Two alternatively spliced transcript variants, encoding distinct isoforms, have been observed for this gene. In addition, multiple polyadenylation sites have been reported. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000240100.7
Gencode Gene: ENSG00000120875.9
Transcript (Including UTRs)
   Position: hg38 chr8:29,333,064-29,350,684 Size: 17,621 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg38 chr8:29,337,026-29,350,278 Size: 13,253 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:29,333,064-29,350,684)mRNA (may differ from genome)Protein (394 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DUS4_HUMAN
DESCRIPTION: RecName: Full=Dual specificity protein phosphatase 4; EC=3.1.3.16; EC=3.1.3.48; AltName: Full=Dual specificity protein phosphatase hVH2; AltName: Full=Mitogen-activated protein kinase phosphatase 2; Short=MAP kinase phosphatase 2; Short=MKP-2;
FUNCTION: Regulates mitogenic signal transduction by dephosphorylating both Thr and Tyr residues on MAP kinases ERK1 and ERK2.
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
SUBUNIT: Hollow spherical complex composed of 24 subunits with pseudooctahedral symmetry, has a tetramer as the basic unit.
SUBCELLULAR LOCATION: Nucleus.
SIMILARITY: Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily.
SIMILARITY: Contains 1 rhodanese domain.
SIMILARITY: Contains 1 tyrosine-protein phosphatase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DUSP4
Diseases sorted by gene-association score: echolalia (2), chronic laryngitis (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D003993 Dibutyl Phthalate
  • D004958 Estradiol
  • C517041 (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II)
  • C010914 2,4-diaminotoluene
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C026137 3-hydroxyacetanilide
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D000082 Acetaminophen
  • D000111 Acetylcysteine
          more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.72 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 148.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -194.30406-0.479 Picture PostScript Text
3' UTR -1275.203962-0.322 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000340 - Dual-sp_phosphatase_cat-dom
IPR020422 - Dual-sp_phosphatase_subgr_cat
IPR024950 - DUSP
IPR008343 - MKP
IPR001763 - Rhodanese-like_dom
IPR000387 - Tyr/Dual-specificity_Pase
IPR016130 - Tyr_Pase_AS

Pfam Domains:
PF00782 - Dual specificity phosphatase, catalytic domain
PF00581 - Rhodanese-like domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3EZZ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13115
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0008138 protein tyrosine/serine/threonine phosphatase activity
GO:0008330 protein tyrosine/threonine phosphatase activity
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity
GO:1990439 MAP kinase threonine phosphatase activity

Biological Process:
GO:0000188 inactivation of MAPK activity
GO:0001706 endoderm formation
GO:0006470 protein dephosphorylation
GO:0016311 dephosphorylation
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0035970 peptidyl-threonine dephosphorylation
GO:0070373 negative regulation of ERK1 and ERK2 cascade

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  LP882412 - Sequence 7 from Patent WO2017180581.
BC012900 - Homo sapiens, clone IMAGE:3881549, mRNA.
JD317356 - Sequence 298380 from Patent EP1572962.
U48807 - Human MAP kinase phosphatase (MKP-2) mRNA, complete cds.
JD234768 - Sequence 215792 from Patent EP1572962.
JD489982 - Sequence 471006 from Patent EP1572962.
JD381510 - Sequence 362534 from Patent EP1572962.
JD086953 - Sequence 67977 from Patent EP1572962.
JD377157 - Sequence 358181 from Patent EP1572962.
JD147148 - Sequence 128172 from Patent EP1572962.
JD324032 - Sequence 305056 from Patent EP1572962.
JD317356 - Sequence 298380 from Patent EP1572962.
JD063950 - Sequence 44974 from Patent EP1572962.
U21108 - Human dual specific protein phosphatase mRNA, complete cds.
JD234768 - Sequence 215792 from Patent EP1572962.
JD489982 - Sequence 471006 from Patent EP1572962.
JD086953 - Sequence 67977 from Patent EP1572962.
JD381510 - Sequence 362534 from Patent EP1572962.
JD189723 - Sequence 170747 from Patent EP1572962.
AL137704 - Homo sapiens mRNA; cDNA DKFZp434O1321 (from clone DKFZp434O1321).
BC014565 - Homo sapiens dual specificity phosphatase 4, mRNA (cDNA clone MGC:2119 IMAGE:3050199), complete cds.
BC002671 - Homo sapiens dual specificity phosphatase 4, mRNA (cDNA clone MGC:3713 IMAGE:3605895), complete cds.
JD224830 - Sequence 205854 from Patent EP1572962.
JD235549 - Sequence 216573 from Patent EP1572962.
JD312861 - Sequence 293885 from Patent EP1572962.
JD240533 - Sequence 221557 from Patent EP1572962.
JD433173 - Sequence 414197 from Patent EP1572962.
JD215371 - Sequence 196395 from Patent EP1572962.
JD561219 - Sequence 542243 from Patent EP1572962.
EU831550 - Synthetic construct Homo sapiens clone HAIB:100066579; DKFZo004F0518 dual specificity phosphatase 4 protein (DUSP4) gene, encodes complete protein.
S80632 - threonine, tyrosine phosphatase [human, brain, mRNA Partial, 1236 nt].
AK314820 - Homo sapiens cDNA, FLJ95698, Homo sapiens dual specificity phosphatase 4 (DUSP4), transcript variant 1, mRNA.
KJ896736 - Synthetic construct Homo sapiens clone ccsbBroadEn_06130 DUSP4 gene, encodes complete protein.
EU831463 - Synthetic construct Homo sapiens clone HAIB:100066492; DKFZo008F0517 dual specificity phosphatase 4 protein (DUSP4) gene, encodes complete protein.
AB463587 - Synthetic construct DNA, clone: pF1KB6552, Homo sapiens DUSP4 gene for dual specificity phosphatase 4, without stop codon, in Flexi system.
CU678102 - Synthetic construct Homo sapiens gateway clone IMAGE:100019215 5' read DUSP4 mRNA.
LF212192 - JP 2014500723-A/19695: Polycomb-Associated Non-Coding RNAs.
MA447769 - JP 2018138019-A/19695: Polycomb-Associated Non-Coding RNAs.
JD461786 - Sequence 442810 from Patent EP1572962.
JD406406 - Sequence 387430 from Patent EP1572962.
JD469170 - Sequence 450194 from Patent EP1572962.
JD538203 - Sequence 519227 from Patent EP1572962.
JD264444 - Sequence 245468 from Patent EP1572962.
JD367098 - Sequence 348122 from Patent EP1572962.
JD339884 - Sequence 320908 from Patent EP1572962.
LY623321 - KR 1020180134347-A/7: DIAGNOSTIC AND THERAPEUTIC METHODS FOR CANCER.
MB416864 - JP 2019518426-A/4: DIAGNOSTIC AND THERAPEUTIC METHODS FOR CANCER.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_dspPathway - Regulation of MAP Kinase Pathways Through Dual Specificity Phosphatases

Reactome (by CSHL, EBI, and GO)

Protein Q13115 (Reactome details) participates in the following event(s):

R-HSA-203797 ERKs are inactivated by dual-specific phosphatases (DUSPs)
R-HSA-5675373 Nuclear DUSPs dephosphorylate MAPKs
R-HSA-202670 ERKs are inactivated
R-HSA-112409 RAF-independent MAPK1/3 activation
R-HSA-5675221 Negative regulation of MAPK pathway
R-HSA-198753 ERK/MAPK targets
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-198725 Nuclear Events (kinase and transcription factor activation)
R-HSA-450282 MAPK targets/ Nuclear events mediated by MAP kinases
R-HSA-5683057 MAPK family signaling cascades
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-450294 MAP kinase activation
R-HSA-162582 Signal Transduction
R-HSA-166520 Signaling by NTRKs
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168249 Innate Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBU5, D3DSU4, DUS4_HUMAN, ENST00000240100.1, ENST00000240100.2, ENST00000240100.3, ENST00000240100.4, ENST00000240100.5, ENST00000240100.6, MKP2, NM_001394, Q13115, Q13524, uc003xhm.1, uc003xhm.2, uc003xhm.3, uc003xhm.4, uc003xhm.5, VH2
UCSC ID: ENST00000240100.7
RefSeq Accession: NM_001394
Protein: Q13115 (aka DUS4_HUMAN)
CCDS: CCDS6072.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.