Human Gene ENSG00000291316 (ENST00000438911.6) from GENCODE V44
  Description: Homo sapiens cysteine and histidine rich 1 (CYHR1), transcript variant 1, mRNA. (from RefSeq NM_138496)
Gencode Transcript: ENST00000438911.6
Gencode Gene: ENSG00000291316.1
Transcript (Including UTRs)
   Position: hg38 chr8:144,449,582-144,465,035 Size: 15,454 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg38 chr8:144,450,379-144,464,901 Size: 14,523 Coding Exon Count: 5 

Page IndexSequence and LinksPrimersMicroarray ExpressionRNA StructureOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:144,449,582-144,465,035)mRNA (may differ from genome)Protein (362 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsHPRD
LynxMGIneXtProtOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -37.90134-0.283 Picture PostScript Text
3' UTR -331.40797-0.416 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  LF210338 - JP 2014500723-A/17841: Polycomb-Associated Non-Coding RNAs.
MA445915 - JP 2018138019-A/17841: Polycomb-Associated Non-Coding RNAs.
BC004544 - Homo sapiens cysteine/histidine-rich 1, mRNA (cDNA clone IMAGE:3945559), partial cds.
AK160381 - Homo sapiens mRNA for FLJ00352 protein.
AK094514 - Homo sapiens cDNA FLJ37195 fis, clone BRALZ2005471, highly similar to Mus musculus cysteine and histidine rich 1 (Cyhr1), transcript variant 1, mRNA.
AB007965 - Homo sapiens mRNA, chromosome 1 specific transcript KIAA0496.
LF337136 - JP 2014500723-A/144639: Polycomb-Associated Non-Coding RNAs.
MA572713 - JP 2018138019-A/144639: Polycomb-Associated Non-Coding RNAs.
BC005073 - Homo sapiens cysteine/histidine-rich 1, mRNA (cDNA clone MGC:13010 IMAGE:3533499), complete cds.
BC065484 - Homo sapiens cysteine/histidine-rich 1, mRNA (cDNA clone MGC:71403 IMAGE:4638402), complete cds.
BC056412 - Homo sapiens cysteine/histidine-rich 1, mRNA (cDNA clone IMAGE:5766915).
LF337148 - JP 2014500723-A/144651: Polycomb-Associated Non-Coding RNAs.
MA572725 - JP 2018138019-A/144651: Polycomb-Associated Non-Coding RNAs.
JD232543 - Sequence 213567 from Patent EP1572962.
JD525762 - Sequence 506786 from Patent EP1572962.
JD466255 - Sequence 447279 from Patent EP1572962.
JD149707 - Sequence 130731 from Patent EP1572962.
JD215195 - Sequence 196219 from Patent EP1572962.
JD356090 - Sequence 337114 from Patent EP1572962.
JD040442 - Sequence 21466 from Patent EP1572962.
JD130052 - Sequence 111076 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000438911.1, ENST00000438911.2, ENST00000438911.3, ENST00000438911.4, ENST00000438911.5, NM_138496, P0DTL6, uc003zcv.1, uc003zcv.2, uc003zcv.3
UCSC ID: ENST00000438911.6
RefSeq Accession: NM_138496
CCDS: CCDS47943.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.