Human Gene CARNMT1 (ENST00000376834.8) from GENCODE V44
Description: Homo sapiens carnosine N-methyltransferase 1 (CARNMT1), transcript variant 3, non-coding RNA. (from RefSeq NR_135282)
RefSeq Summary (NM_152420): The protein encoded by this gene is a methyltransferase that converts carnosine to anserine, a dipeptide found abundantly in skeletal muscle. The encoded protein can methylate other dipeptides as well. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Feb 2016].
Gencode Transcript: ENST00000376834.8
Gencode Gene: ENSG00000156017.13
Transcript (Including UTRs)
Position: hg38 chr9:74,980,790-75,028,293 Size: 47,504 Total Exon Count: 8 Strand: -
Coding Region
Position: hg38 chr9:74,983,767-75,028,241 Size: 44,475 Coding Exon Count: 8
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CI041_HUMAN
DESCRIPTION: RecName: Full=UPF0586 protein C9orf41;
SIMILARITY: Belongs to the UPF0586 family.SEQUENCE CAUTION: Sequence=BAC05369.1; Type=Erroneous initiation;
Primer design for this transcript
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR012901 - N2227
Pfam Domains: PF07942 - N2227-like protein
ModBase Predicted Comparative 3D Structure on Q8N4J0
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF211275 - JP 2014500723-A/18778: Polycomb-Associated Non-Coding RNAs.MA446852 - JP 2018138019-A/18778: Polycomb-Associated Non-Coding RNAs.BX647386 - Homo sapiens mRNA; cDNA DKFZp686C13144 (from clone DKFZp686C13144).BX538061 - Homo sapiens mRNA; cDNA DKFZp686J16172 (from clone DKFZp686J16172).LF208560 - JP 2014500723-A/16063: Polycomb-Associated Non-Coding RNAs.MA444137 - JP 2018138019-A/16063: Polycomb-Associated Non-Coding RNAs.LF377868 - JP 2014500723-A/185371: Polycomb-Associated Non-Coding RNAs.MA613445 - JP 2018138019-A/185371: Polycomb-Associated Non-Coding RNAs.LF377869 - JP 2014500723-A/185372: Polycomb-Associated Non-Coding RNAs.MA613446 - JP 2018138019-A/185372: Polycomb-Associated Non-Coding RNAs.LF345149 - JP 2014500723-A/152652: Polycomb-Associated Non-Coding RNAs.MA580726 - JP 2018138019-A/152652: Polycomb-Associated Non-Coding RNAs.LF209816 - JP 2014500723-A/17319: Polycomb-Associated Non-Coding RNAs.MA445393 - JP 2018138019-A/17319: Polycomb-Associated Non-Coding RNAs.BC034033 - Homo sapiens chromosome 9 open reading frame 41, mRNA (cDNA clone MGC:24721 IMAGE:4278547), complete cds.JD089816 - Sequence 70840 from Patent EP1572962.JD188071 - Sequence 169095 from Patent EP1572962.JD398631 - Sequence 379655 from Patent EP1572962.JD070427 - Sequence 51451 from Patent EP1572962.JD071321 - Sequence 52345 from Patent EP1572962.JD555790 - Sequence 536814 from Patent EP1572962.JD203884 - Sequence 184908 from Patent EP1572962.JD160201 - Sequence 141225 from Patent EP1572962.JD245770 - Sequence 226794 from Patent EP1572962.JD337762 - Sequence 318786 from Patent EP1572962.JD337763 - Sequence 318787 from Patent EP1572962.JD248835 - Sequence 229859 from Patent EP1572962.JD084935 - Sequence 65959 from Patent EP1572962.JD463327 - Sequence 444351 from Patent EP1572962.JD337761 - Sequence 318785 from Patent EP1572962.JD161816 - Sequence 142840 from Patent EP1572962.JD153370 - Sequence 134394 from Patent EP1572962.JD198515 - Sequence 179539 from Patent EP1572962.JD140654 - Sequence 121678 from Patent EP1572962.JD321207 - Sequence 302231 from Patent EP1572962.JD321208 - Sequence 302232 from Patent EP1572962.JD388641 - Sequence 369665 from Patent EP1572962.JD123866 - Sequence 104890 from Patent EP1572962.JD253099 - Sequence 234123 from Patent EP1572962.JD388640 - Sequence 369664 from Patent EP1572962.JD388642 - Sequence 369666 from Patent EP1572962.JD252492 - Sequence 233516 from Patent EP1572962.JD415596 - Sequence 396620 from Patent EP1572962.JD228408 - Sequence 209432 from Patent EP1572962.JD525353 - Sequence 506377 from Patent EP1572962.JD547949 - Sequence 528973 from Patent EP1572962.JD547948 - Sequence 528972 from Patent EP1572962.JD161815 - Sequence 142839 from Patent EP1572962.JD327799 - Sequence 308823 from Patent EP1572962.AK098661 - Homo sapiens cDNA FLJ25795 fis, clone TST07031.JD056683 - Sequence 37707 from Patent EP1572962.JD412145 - Sequence 393169 from Patent EP1572962.HQ447650 - Synthetic construct Homo sapiens clone IMAGE:100070996; CCSB012841_02 chromosome 9 open reading frame 41 (C9orf41) gene, encodes complete protein.KJ895522 - Synthetic construct Homo sapiens clone ccsbBroadEn_04916 C9orf41 gene, encodes complete protein.EU832520 - Synthetic construct Homo sapiens clone HAIB:100067549; DKFZo008H0629 chromosome 9 open reading frame 41 protein (C9orf41) gene, encodes complete protein.EU832602 - Synthetic construct Homo sapiens clone HAIB:100067631; DKFZo004H0630 chromosome 9 open reading frame 41 protein (C9orf41) gene, encodes complete protein.AK299691 - Homo sapiens cDNA FLJ58856 complete cds.LF377870 - JP 2014500723-A/185373: Polycomb-Associated Non-Coding RNAs.MA613447 - JP 2018138019-A/185373: Polycomb-Associated Non-Coding RNAs.LF331855 - JP 2014500723-A/139358: Polycomb-Associated Non-Coding RNAs.MA567432 - JP 2018138019-A/139358: Polycomb-Associated Non-Coding RNAs.LF377871 - JP 2014500723-A/185374: Polycomb-Associated Non-Coding RNAs.MA613448 - JP 2018138019-A/185374: Polycomb-Associated Non-Coding RNAs.LF331854 - JP 2014500723-A/139357: Polycomb-Associated Non-Coding RNAs.MA567431 - JP 2018138019-A/139357: Polycomb-Associated Non-Coding RNAs.LF377872 - JP 2014500723-A/185375: Polycomb-Associated Non-Coding RNAs.MA613449 - JP 2018138019-A/185375: Polycomb-Associated Non-Coding RNAs.LF331853 - JP 2014500723-A/139356: Polycomb-Associated Non-Coding RNAs.MA567430 - JP 2018138019-A/139356: Polycomb-Associated Non-Coding RNAs.CU689816 - Synthetic construct Homo sapiens gateway clone IMAGE:100022282 5' read C9orf41 mRNA.LF377873 - JP 2014500723-A/185376: Polycomb-Associated Non-Coding RNAs.MA613450 - JP 2018138019-A/185376: Polycomb-Associated Non-Coding RNAs.LF331852 - JP 2014500723-A/139355: Polycomb-Associated Non-Coding RNAs.MA567429 - JP 2018138019-A/139355: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: C9orf41, CI041_HUMAN, ENST00000376834.1, ENST00000376834.2, ENST00000376834.3, ENST00000376834.4, ENST00000376834.5, ENST00000376834.6, ENST00000376834.7, NR_135282, Q7Z383, Q8N4J0, Q8N7C5, uc004ajq.1, uc004ajq.2, uc004ajq.3, uc004ajq.4, uc004ajq.5UCSC ID: ENST00000376834.8RefSeq Accession: NM_152420
Protein: Q8N4J0
(aka CI041_HUMAN)
CCDS: CCDS6649.1
Methods, Credits, and Use Restrictions
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