Human Gene FAM120AOS (ENST00000375412.11) from GENCODE V44
  Description: Homo sapiens family with sequence similarity 120A opposite strand (FAM120AOS), transcript variant 5, non-coding RNA. (from RefSeq NR_136231)
RefSeq Summary (NM_198841): Differences in the expression level of this gene are associated with the survival rate of those with glioma. [provided by RefSeq, May 2017].
Gencode Transcript: ENST00000375412.11
Gencode Gene: ENSG00000188938.17
Transcript (Including UTRs)
   Position: hg38 chr9:93,443,332-93,453,581 Size: 10,250 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg38 chr9:93,447,611-93,452,709 Size: 5,099 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:93,443,332-93,453,581)mRNA (may differ from genome)Protein (256 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsHGNC
HPRDLynxMalacardsMGIneXtProtPubMed
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: F120S_HUMAN
DESCRIPTION: RecName: Full=Putative FAM120A opposite strand protein;
CAUTION: Product of a dubious gene prediction.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 34.79 RPKM in Pituitary
Total median expression: 863.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -262.20872-0.301 Picture PostScript Text
3' UTR -1226.204279-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q5T036
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC068089 - Homo sapiens cDNA clone IMAGE:6274514, partial cds.
BC015241 - Homo sapiens cDNA clone IMAGE:3914493, partial cds.
JD257751 - Sequence 238775 from Patent EP1572962.
JD247067 - Sequence 228091 from Patent EP1572962.
JD247066 - Sequence 228090 from Patent EP1572962.
JD247068 - Sequence 228092 from Patent EP1572962.
JD413476 - Sequence 394500 from Patent EP1572962.
JD131536 - Sequence 112560 from Patent EP1572962.
JD198171 - Sequence 179195 from Patent EP1572962.
JD459836 - Sequence 440860 from Patent EP1572962.
JD271429 - Sequence 252453 from Patent EP1572962.
JD212775 - Sequence 193799 from Patent EP1572962.
JD536553 - Sequence 517577 from Patent EP1572962.
JD231039 - Sequence 212063 from Patent EP1572962.
JD542802 - Sequence 523826 from Patent EP1572962.
JD247065 - Sequence 228089 from Patent EP1572962.
AK093641 - Homo sapiens cDNA FLJ36322 fis, clone THYMU2005507.
JD419907 - Sequence 400931 from Patent EP1572962.
JD319280 - Sequence 300304 from Patent EP1572962.
JD463952 - Sequence 444976 from Patent EP1572962.
JD478689 - Sequence 459713 from Patent EP1572962.
JD543419 - Sequence 524443 from Patent EP1572962.
JD147896 - Sequence 128920 from Patent EP1572962.
JD543418 - Sequence 524442 from Patent EP1572962.
JD543417 - Sequence 524441 from Patent EP1572962.
JD497856 - Sequence 478880 from Patent EP1572962.
JD376112 - Sequence 357136 from Patent EP1572962.
BC080634 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:6563304).
BC037551 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:5214118), partial cds.
BC063650 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:4803436).
BC038803 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:5526893), partial cds.
BC046183 - Homo sapiens chromosome 9 open reading frame 10 opposite strand, mRNA (cDNA clone IMAGE:5226128), partial cds.
AK056096 - Homo sapiens cDNA FLJ31534 fis, clone NT2RI2000671.
JD082921 - Sequence 63945 from Patent EP1572962.
JD512256 - Sequence 493280 from Patent EP1572962.
JD309752 - Sequence 290776 from Patent EP1572962.
JD412389 - Sequence 393413 from Patent EP1572962.
JD098177 - Sequence 79201 from Patent EP1572962.
JD506673 - Sequence 487697 from Patent EP1572962.
JD040892 - Sequence 21916 from Patent EP1572962.
BC107135 - Homo sapiens cDNA clone IMAGE:40025893.
BC107136 - Homo sapiens cDNA clone IMAGE:40025901.
BC113074 - Homo sapiens cDNA clone IMAGE:40025891.
JD039622 - Sequence 20646 from Patent EP1572962.
JD133967 - Sequence 114991 from Patent EP1572962.
DQ600084 - Homo sapiens piRNA piR-38150, complete sequence.
JD516268 - Sequence 497292 from Patent EP1572962.
JD130956 - Sequence 111980 from Patent EP1572962.
JD316737 - Sequence 297761 from Patent EP1572962.
JD095217 - Sequence 76241 from Patent EP1572962.
JD241287 - Sequence 222311 from Patent EP1572962.
JD391127 - Sequence 372151 from Patent EP1572962.
JD316057 - Sequence 297081 from Patent EP1572962.
AK309269 - Homo sapiens cDNA, FLJ99310.
JD386149 - Sequence 367173 from Patent EP1572962.
BC160143 - Synthetic construct Homo sapiens clone IMAGE:100064175, MGC:193258 family with sequence similarity 120A opposite strand (FAM120AOS) mRNA, encodes complete protein.
DQ584644 - Homo sapiens piRNA piR-51756, complete sequence.
DQ579422 - Homo sapiens piRNA piR-47534, complete sequence.
DQ599685 - Homo sapiens piRNA piR-37751, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NN20, C9orf10OS, ENST00000375412.1, ENST00000375412.10, ENST00000375412.2, ENST00000375412.3, ENST00000375412.4, ENST00000375412.5, ENST00000375412.6, ENST00000375412.7, ENST00000375412.8, ENST00000375412.9, F120S_HUMAN, NR_136231, Q5T036, uc004atu.1, uc004atu.2, uc004atu.3, uc004atu.4, uc004atu.5, uc004atu.6, uc004atu.7
UCSC ID: ENST00000375412.11
RefSeq Accession: NM_198841
Protein: Q5T036 (aka F120S_HUMAN)
CCDS: CCDS6705.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.