Human Gene RBM41 (ENST00000372487.5) from GENCODE V44
Description: May bind RNA (Potential). (from UniProt Q96IZ5)
Gencode Transcript: ENST00000372487.5
Gencode Gene: ENSG00000089682.17
Transcript (Including UTRs)
Position: hg38 chrX:107,064,420-107,118,800 Size: 54,381 Total Exon Count: 8 Strand: -
Coding Region
Position: hg38 chrX:107,065,754-107,118,773 Size: 53,020 Coding Exon Count: 8
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: RBM41_HUMAN
DESCRIPTION: RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding motif protein 41;
FUNCTION: May bind RNA (Potential).SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom
Pfam Domains: PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Protein Data Bank (PDB) 3-D Structure
ModBase Predicted Comparative 3D Structure on Q96IZ5
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF385357 - JP 2014500723-A/192860: Polycomb-Associated Non-Coding RNAs.MA620934 - JP 2018138019-A/192860: Polycomb-Associated Non-Coding RNAs.AK001878 - Homo sapiens cDNA FLJ11016 fis, clone PLACE1003334.BC006986 - Homo sapiens RNA binding motif protein 41, mRNA (cDNA clone MGC:12215 IMAGE:3995903), complete cds.AK023732 - Homo sapiens cDNA FLJ13670 fis, clone PLACE1011725.AL832966 - Homo sapiens mRNA; cDNA DKFZp666B152 (from clone DKFZp666B152).JD401905 - Sequence 382929 from Patent EP1572962.JD425290 - Sequence 406314 from Patent EP1572962.JD240819 - Sequence 221843 from Patent EP1572962.JD043129 - Sequence 24153 from Patent EP1572962.JD425289 - Sequence 406313 from Patent EP1572962.JD441396 - Sequence 422420 from Patent EP1572962.JD425286 - Sequence 406310 from Patent EP1572962.JD564358 - Sequence 545382 from Patent EP1572962.JD043128 - Sequence 24152 from Patent EP1572962.JD284123 - Sequence 265147 from Patent EP1572962.JD286738 - Sequence 267762 from Patent EP1572962.JD498274 - Sequence 479298 from Patent EP1572962.JD225581 - Sequence 206605 from Patent EP1572962.JD413313 - Sequence 394337 from Patent EP1572962.JD198023 - Sequence 179047 from Patent EP1572962.JD337475 - Sequence 318499 from Patent EP1572962.JD246791 - Sequence 227815 from Patent EP1572962.JD165789 - Sequence 146813 from Patent EP1572962.JD361488 - Sequence 342512 from Patent EP1572962.JD052194 - Sequence 33218 from Patent EP1572962.JD326249 - Sequence 307273 from Patent EP1572962.JD304461 - Sequence 285485 from Patent EP1572962.JD354903 - Sequence 335927 from Patent EP1572962.JD362648 - Sequence 343672 from Patent EP1572962.JD110051 - Sequence 91075 from Patent EP1572962.JD312782 - Sequence 293806 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: ENST00000372487.1, ENST00000372487.2, ENST00000372487.3, ENST00000372487.4, NM_001394127, Q5JSN7, Q5JSN8, Q96IZ5, Q9H8F7, Q9NV04, RBM41_HUMAN, uc004emy.1, uc004emy.2, uc004emy.3UCSC ID: ENST00000372487.5RefSeq Accession: NM_001171080
Protein: Q96IZ5
(aka RBM41_HUMAN)
CCDS: CCDS14526.1 , CCDS55472.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.