Human Gene PABIR2 (ENST00000370790.5) from GENCODE V44
Description: Homo sapiens family with sequence similarity 122B (FAM122B), transcript variant 2, mRNA. (from RefSeq NM_001166599)
Gencode Transcript: ENST00000370790.5
Gencode Gene: ENSG00000156504.17
Transcript (Including UTRs)
Position: hg38 chrX:134,769,566-134,797,134 Size: 27,569 Total Exon Count: 9 Strand: -
Coding Region
Position: hg38 chrX:134,772,139-134,796,205 Size: 24,067 Coding Exon Count: 9
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: F122B_HUMAN
DESCRIPTION: RecName: Full=Protein FAM122B;
PTM: Isoform 3 and isoform 4 are phosphorylated on Ser-62 and Ser- 64.SIMILARITY: Belongs to the FAM122 family.SEQUENCE CAUTION: Sequence=AAH32419.1; Type=Erroneous initiation;
Primer design for this transcript
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR026716 - FAM122
ModBase Predicted Comparative 3D Structure on Q7Z309
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BX538218 - Homo sapiens mRNA; cDNA DKFZp686L20116 (from clone DKFZp686L20116); complete cds.AK124940 - Homo sapiens cDNA FLJ42950 fis, clone BRSTN2007284.AL832218 - Homo sapiens mRNA; cDNA DKFZp686E0936 (from clone DKFZp686E0936).AK026809 - Homo sapiens cDNA: FLJ23156 fis, clone LNG09609.AK125991 - Homo sapiens cDNA FLJ44003 fis, clone TESTI4022936.AK124650 - Homo sapiens cDNA FLJ42659 fis, clone BRAMY2003008.JD526898 - Sequence 507922 from Patent EP1572962.AK297720 - Homo sapiens cDNA FLJ57750 complete cds.AB541015 - Homo sapiens SPACIA2 mRNA for synoviocyte proliferation associated in collagen-induced arthritis 2, isoform 2, complete cds.AK292517 - Homo sapiens cDNA FLJ76450 complete cds.BC019221 - Homo sapiens family with sequence similarity 122B, mRNA (cDNA clone MGC:11157 IMAGE:3841054), complete cds.BC032419 - Homo sapiens family with sequence similarity 122B, mRNA (cDNA clone IMAGE:5222139), complete cds.JD086629 - Sequence 67653 from Patent EP1572962.JD244440 - Sequence 225464 from Patent EP1572962.JD563654 - Sequence 544678 from Patent EP1572962.JD299243 - Sequence 280267 from Patent EP1572962.AB541014 - Homo sapiens SPACIA2 mRNA for synoviocyte proliferation associated in collagen-induced arthritis 2, isoform 1, complete cds.CU676388 - Synthetic construct Homo sapiens gateway clone IMAGE:100021816 5' read FAM122B mRNA.AM393279 - Synthetic construct Homo sapiens clone IMAGE:100002156 for hypothetical protein (FAM122B gene).KJ895706 - Synthetic construct Homo sapiens clone ccsbBroadEn_05100 FAM122B gene, encodes complete protein.AB528130 - Synthetic construct DNA, clone: pF1KE0166, Homo sapiens FAM122B gene for family with sequence similarity 122B, without stop codon, in Flexi system.JD185615 - Sequence 166639 from Patent EP1572962.JD176860 - Sequence 157884 from Patent EP1572962.JD294293 - Sequence 275317 from Patent EP1572962.JD226383 - Sequence 207407 from Patent EP1572962.JD405707 - Sequence 386731 from Patent EP1572962.JD364960 - Sequence 345984 from Patent EP1572962.JD131449 - Sequence 112473 from Patent EP1572962.JD111193 - Sequence 92217 from Patent EP1572962.JD422544 - Sequence 403568 from Patent EP1572962.JD133424 - Sequence 114448 from Patent EP1572962.JD322340 - Sequence 303364 from Patent EP1572962.JD351417 - Sequence 332441 from Patent EP1572962.JD386095 - Sequence 367119 from Patent EP1572962.JD251495 - Sequence 232519 from Patent EP1572962.JD300015 - Sequence 281039 from Patent EP1572962.JD376403 - Sequence 357427 from Patent EP1572962.JD455997 - Sequence 437021 from Patent EP1572962.JD386102 - Sequence 367126 from Patent EP1572962.JD519557 - Sequence 500581 from Patent EP1572962.JD521982 - Sequence 503006 from Patent EP1572962.JD398912 - Sequence 379936 from Patent EP1572962.JD153797 - Sequence 134821 from Patent EP1572962.JD150393 - Sequence 131417 from Patent EP1572962.JD133059 - Sequence 114083 from Patent EP1572962.JD254069 - Sequence 235093 from Patent EP1572962.JD392292 - Sequence 373316 from Patent EP1572962.JD153897 - Sequence 134921 from Patent EP1572962.JD253328 - Sequence 234352 from Patent EP1572962.JD081809 - Sequence 62833 from Patent EP1572962.JD536473 - Sequence 517497 from Patent EP1572962.JD447889 - Sequence 428913 from Patent EP1572962.JD108807 - Sequence 89831 from Patent EP1572962.JD399183 - Sequence 380207 from Patent EP1572962.JD468569 - Sequence 449593 from Patent EP1572962.JD436387 - Sequence 417411 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A8K902, ENST00000370790.1, ENST00000370790.2, ENST00000370790.3, ENST00000370790.4, F122B_HUMAN, FAM122B, NM_001166599, Q6PIM2, Q6ZU47, Q6ZV64, Q6ZVE4, Q7Z309, Q8TB75, uc004exr.1, uc004exr.2, uc004exr.3, uc004exr.4UCSC ID: ENST00000370790.5RefSeq Accession: NM_001166599
Protein: Q7Z309
(aka F122B_HUMAN)
CCDS: CCDS14643.1 , CCDS55497.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.