Mouse Gene Prss39 (ENSMUST00000027299.9) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus protease, serine 39 (Prss39), transcript variant 1, mRNA. (from RefSeq NM_009355)
Gencode Transcript: ENSMUST00000027299.9
Gencode Gene: ENSMUSG00000026125.9
Transcript (Including UTRs)
   Position: mm10 chr1:34,498,410-34,503,063 Size: 4,654 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr1:34,498,457-34,502,947 Size: 4,491 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:34,498,410-34,503,063)mRNA (may differ from genome)Protein (367 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: PRS39_MOUSE
DESCRIPTION: RecName: Full=Inactive serine protease 39; AltName: Full=Inactive testicular serine protease 1; Flags: Precursor;
FUNCTION: May play an important role in the sperm/egg interaction; released during the acrosome reaction.
SUBCELLULAR LOCATION: Cytoplasmic vesicle, secretory vesicle, acrosome. Secreted.
TISSUE SPECIFICITY: Expressed in testis. More specifically, abundantly expressed in the haploid round spermatid.
MISCELLANEOUS: There appears to be no human ortholog of this protein.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 1 peptidase S1 domain.
CAUTION: In contrast to other members of the family, lacks the conserved Asp at position 158, which is replaced by an Asn residue, suggesting it is inactive.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.9047-0.274 Picture PostScript Text
3' UTR -24.00116-0.207 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A

Pfam Domains:
PF00089 - Trypsin
PF09342 - Domain of unknown function (DUF1986)

SCOP Domains:
50494 - Trypsin-like serine proteases

ModBase Predicted Comparative 3D Structure on O70169
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity

Biological Process:
GO:0006508 proteolysis

Cellular Component:
GO:0001669 acrosomal vesicle
GO:0005576 extracellular region
GO:0031410 cytoplasmic vesicle


-  Descriptions from all associated GenBank mRNAs
  BC115665 - Mus musculus testicular serine protease 1, mRNA (cDNA clone MGC:144580 IMAGE:40103370), complete cds.
BC115666 - Mus musculus testicular serine protease 1, mRNA (cDNA clone MGC:144581 IMAGE:40103373), complete cds.
AB008910 - Mus musculus mRNA for TESP1, complete cds.
BC049616 - Mus musculus testicular serine protease 1, mRNA (cDNA clone MGC:58320 IMAGE:6773970), complete cds.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_009355, O70169, PRS39_MOUSE, Q80YD5, Tesp1, uc007aov.1, uc007aov.2
UCSC ID: uc007aov.2
RefSeq Accession: NM_009355
Protein: O70169 (aka PRS39_MOUSE)
CCDS: CCDS14868.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.