Mouse Gene Ndufa10 (ENSMUST00000027478.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus NADH:ubiquinone oxidoreductase subunit A10 (Ndufa10), mRNA. (from RefSeq NM_024197)
Gencode Transcript: ENSMUST00000027478.6
Gencode Gene: ENSMUSG00000026260.12
Transcript (Including UTRs)
   Position: mm10 chr1:92,439,010-92,473,860 Size: 34,851 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm10 chr1:92,439,839-92,473,737 Size: 33,899 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:92,439,010-92,473,860)mRNA (may differ from genome)Protein (355 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: NDUAA_MOUSE
DESCRIPTION: RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; AltName: Full=Complex I-42kD; Short=CI-42kD; AltName: Full=NADH-ubiquinone oxidoreductase 42 kDa subunit; Flags: Precursor;
FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).
COFACTOR: Binds 1 FAD per subunit.
SUBUNIT: Complex I is composed of 45 different subunits. This a component of the hydrophobic protein fraction (By similarity).
SUBCELLULAR LOCATION: Mitochondrion matrix.
PTM: Acetylation of Lys-242 is observed in liver mitochondria from fasted mice but not from fed mice.
SIMILARITY: Belongs to the complex I NDUFA10 subunit family.
SEQUENCE CAUTION: Sequence=BAB23961.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.80123-0.315 Picture PostScript Text
3' UTR -258.40829-0.312 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002624 - Deoxynucleoside_kinase
IPR015828 - NADH_UbQ_OxRdtase_42KD_su

Pfam Domains:
PF01712 - Deoxynucleoside kinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q99LC3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsemblEnsemblWormBase 
Protein SequenceProtein Sequence Protein Sequence  
AlignmentAlignment Alignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008137 NADH dehydrogenase (ubiquinone) activity

Biological Process:
GO:0006120 mitochondrial electron transport, NADH to ubiquinone
GO:0032981 mitochondrial respiratory chain complex I assembly
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005747 mitochondrial respiratory chain complex I
GO:0005759 mitochondrial matrix
GO:0043209 myelin sheath
GO:0070469 respiratory chain


-  Descriptions from all associated GenBank mRNAs
  AK046292 - Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230365D16 product:similar to NADH-UBIQUINONE OXIDOREDUCTASE 42 KDA SUBUNIT, MITOCHONDRIAL PRECURSOR (EC 1.6.5.3) (EC 1.6.99.3) (COMPLEX I-42KD) (CI-42KD) [Homo sapiens], full insert sequence.
AK013675 - Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900053E13 product:similar to NADH-UBIQUINONE OXIDOREDUCTASE 42 KDA SUBUNIT, MITOCHONDRIAL PRECURSOR (EC 1.6.5.3) (EC 1.6.99.3) (COMPLEX I-42KD) (CI-42KD) [Homo sapiens], full insert sequence.
AK184537 - Mus musculus cDNA, clone:Y0G0130I09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
BC003439 - Mus musculus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10, mRNA (cDNA clone MGC:6491 IMAGE:2647815), complete cds.
AK203226 - Mus musculus cDNA, clone:Y1G0144D10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
AK145979 - Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530020L15 product:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10, full insert sequence.
AK005339 - Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500032C21 product:similar to NADH-UBIQUINONE OXIDOREDUCTASE 42 KDA SUBUNIT, MITOCHONDRIAL PRECURSOR (EC 1.6.5.3) (EC 1.6.99.3) (COMPLEX I-42KD) (CI-42KD) [Homo sapiens], full insert sequence.
AK183638 - Mus musculus cDNA, clone:Y0G0126J22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
AK217787 - Mus musculus cDNA, clone:Y2G0143A03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
AK177419 - Mus musculus cDNA, clone:Y0G0102L02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
AK184477 - Mus musculus cDNA, clone:Y0G0130E05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
AK185477 - Mus musculus cDNA, clone:Y0G0134D02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027478, based on BLAT search.
AK078375 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:6530425O17 product:unclassifiable, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00190 - Oxidative phosphorylation
mmu01100 - Metabolic pathways
mmu05010 - Alzheimer's disease
mmu05012 - Parkinson's disease
mmu05016 - Huntington's disease

BioCyc Knowledge Library
PWY-3781 - aerobic respiration -- electron donor II
PWY0-1334 - NADH to cytochrome bd oxidase electron transfer
PWY0-1335 - NADH to cytochrome bo oxidase electron transfer

Reactome (by CSHL, EBI, and GO)

Protein Q99LC3 (Reactome details) participates in the following event(s):

R-MMU-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-MMU-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-MMU-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-MMU-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-MMU-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-MMU-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-MMU-163217 Complex I oxidises NADH to NAD+, reduces CoQ to QH2
R-MMU-6799198 Complex I biogenesis
R-MMU-611105 Respiratory electron transport
R-MMU-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-MMU-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: NDUAA_MOUSE, NM_024197, Q3UKK0, Q8BL57, Q99LC3, Q9CW21, uc007cbh.1, uc007cbh.2, uc007cbh.3
UCSC ID: uc007cbh.3
RefSeq Accession: NM_024197
Protein: Q99LC3 (aka NDUAA_MOUSE)
CCDS: CCDS15167.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.