Mouse Gene Oct-1 (uc007dkg.1) Description and Page Index
  Description: Mus musculus POU domain transcription factor Oct-1B mRNA, complete cds.
Transcript (Including UTRs)
   Position: mm9 chr1:167,861,793-167,932,765 Size: 70,973 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksMicroarray ExpressionOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2011-03-02

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:167,861,793-167,932,765)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsPubMedStanford SOURCE

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
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Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
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GNF Expression Atlas Data from U74a Mouse Chip

        
     
    
    
    
   
    
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Affymetrix All Exon Microarrays

           
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC066201 - Mus musculus cDNA clone IMAGE:30472546, containing frame-shift errors.
X68363 - M.musculus mRNA for Oct-1B protein.
X68362 - M.musculus mRNA for Oct-1A protein.
X68364 - M.musculus mRNA for Oct-1C protein.
AF508939 - Mus musculus POU domain transcription factor Oct-1B mRNA, complete cds.
AK028237 - Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810482H01 product:POU domain, class 2, transcription factor 1, full insert sequence.
AY177625 - Mus musculus transcription factor OCT-1Z mRNA, complete cds.
AK044830 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130006M20 product:POU domain, class 2, transcription factor 1, full insert sequence.
AJ489477 - Mus musculus partial mRNA for ubiquitous transcription factor, isoform Oct-1d (oct-1 gene).
AJ489478 - Mus musculus partial mRNA for ubiquitous transcription factor, isoform Oct-1e (oct-1 gene).
LF192978 - JP 2014500723-A/481: Polycomb-Associated Non-Coding RNAs.
MA428555 - JP 2018138019-A/481: Polycomb-Associated Non-Coding RNAs.
S65461 - gene colinear with CD3 zeta/eta/theta [mice, thymus, mRNA Partial, 2504 nt].
AJ296212 - Mus musculus mRNA for ubiquitous Oct-1L (Oct-1 gene).
BC146305 - Synthetic construct Mus musculus clone IMAGE:100015196, MGC:180421 POU domain, class 2, transcription factor 1 (Pou2f1) mRNA, encodes complete protein.
BC148748 - Synthetic construct Mus musculus clone IMAGE:100015808, MGC:183446 POU domain, class 2, transcription factor 1 (Pou2f1) mRNA, encodes complete protein.
X56230 - Mus musculus OCT-1 mRNA for octamer-binding protein.
AJ489475 - Mus musculus mRNA for ubiquitous transcription factor, isoform Oct-1rb (oct-1 gene).
AJ489474 - Mus musculus mRNA for ubiquitous transcription factor, isoform Oct-1ra (oct-1 gene).
DQ699747 - Mus musculus piRNA piR-115069, complete sequence.
LF219391 - JP 2014500723-A/26894: Polycomb-Associated Non-Coding RNAs.
MA454968 - JP 2018138019-A/26894: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AJ489478
UCSC ID: uc007dkg.1
RefSeq Accession: NM_198932

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AJ489478.1
exon count: 3CDS single in 3' UTR: no RNA size: 178
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 548.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.