Mouse Gene Lama4 (ENSMUST00000019992.5) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus laminin, alpha 4 (Lama4), mRNA. (from RefSeq NM_010681)
Gencode Transcript: ENSMUST00000019992.5
Gencode Gene: ENSMUSG00000019846.11
Transcript (Including UTRs)
   Position: mm10 chr10:38,965,515-39,110,188 Size: 144,674 Total Exon Count: 38 Strand: +
Coding Region
   Position: mm10 chr10:38,965,955-39,110,033 Size: 144,079 Coding Exon Count: 38 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:38,965,515-39,110,188)mRNA (may differ from genome)Protein (1816 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: LAMA4_MOUSE
DESCRIPTION: RecName: Full=Laminin subunit alpha-4; AltName: Full=Laminin-14 subunit alpha; AltName: Full=Laminin-8 subunit alpha; AltName: Full=Laminin-9 subunit alpha; Flags: Precursor;
FUNCTION: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
SUBUNIT: Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Alpha-4 is a subunit of laminin-8 (laminin-411), laminin-9 (laminin-421) and laminin-14 (laminin-423).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix, basement membrane. Note=Major component.
TISSUE SPECIFICITY: Strongly expressed in peripheral nerves, cardiac muscle, fat, dermis, lung stroma, aortic endothelium, endocardium and endothelium of blood vessels in skin and brain.
DOMAIN: The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structure.
DOMAIN: Domain G is globular.
SIMILARITY: Contains 4 laminin EGF-like domains.
SIMILARITY: Contains 5 laminin G-like domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -152.90440-0.347 Picture PostScript Text
3' UTR -50.10155-0.323 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008985 - ConA-like_lec_gl_sf
IPR013320 - ConA-like_subgrp
IPR002049 - EGF_laminin
IPR001791 - Laminin_G
IPR009254 - Laminin_I
IPR010307 - Laminin_II

Pfam Domains:
PF00053 - Laminin EGF domain
PF00054 - Laminin G domain
PF02210 - Laminin G domain
PF06008 - Laminin Domain I
PF06009 - Laminin Domain II

SCOP Domains:
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin
57184 - Growth factor receptor domain
58104 - Methyl-accepting chemotaxis protein (MCP) signaling domain

ModBase Predicted Comparative 3D Structure on P97927
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding

Biological Process:
GO:0001568 blood vessel development
GO:0007155 cell adhesion
GO:0030155 regulation of cell adhesion
GO:0030334 regulation of cell migration
GO:0045995 regulation of embryonic development
GO:0050873 brown fat cell differentiation

Cellular Component:
GO:0005576 extracellular region
GO:0005604 basement membrane
GO:0005605 basal lamina
GO:0005615 extracellular space
GO:0031012 extracellular matrix


-  Descriptions from all associated GenBank mRNAs
  U69176 - Mus musculus laminin alpha 4 chain mRNA, complete cds.
AK054014 - Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230012G01 product:laminin, alpha 4, full insert sequence.
AK145237 - Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930025K20 product:laminin, alpha 4, full insert sequence.
AK032825 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720458G04 product:laminin, alpha 4, full insert sequence.
Y09827 - M.musculus mRNA for laminin alpha 4.
U59865 - Mus musculus laminin alpha 4 (Lama4) mRNA, complete cds.
BC115942 - Mus musculus laminin, alpha 4, mRNA (cDNA clone MGC:141567 IMAGE:40087182), complete cds.
BC008533 - Mus musculus laminin, alpha 4, mRNA (cDNA clone IMAGE:3490870), partial cds.
LF197964 - JP 2014500723-A/5467: Polycomb-Associated Non-Coding RNAs.
LF202954 - JP 2014500723-A/10457: Polycomb-Associated Non-Coding RNAs.
AK053234 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030047H14 product:laminin, alpha 4, full insert sequence.
AK031189 - Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930424P08 product:laminin, alpha 4, full insert sequence.
AK087015 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030020B12 product:laminin, alpha 4, full insert sequence.
AK164903 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030011K13 product:laminin, alpha 4, full insert sequence.
AK085945 - Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830032F10 product:laminin, alpha 4, full insert sequence.
MA433541 - JP 2018138019-A/5467: Polycomb-Associated Non-Coding RNAs.
MA438531 - JP 2018138019-A/10457: Polycomb-Associated Non-Coding RNAs.
U88352 - Mus musculus laminin alpha 4 chain (Lama4) mRNA, partial cds.
D89813 - Mus musculus Lama4 mRNA for laminin alpha 4, partial cds.
U58950 - Mus musculus laminin alpha 4 (LamA4) mRNA, partial cds.
AK208761 - Mus musculus cDNA, clone:Y2G0112K16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019992, based on BLAT search.
AK086886 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030009G12 product:unclassifiable, full insert sequence.
BC038526 - Mus musculus laminin, alpha 4, mRNA (cDNA clone IMAGE:1493765), with apparent retained intron.
BC056176 - Mus musculus laminin, alpha 4, mRNA (cDNA clone IMAGE:5683251), partial cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04510 - Focal adhesion
mmu04512 - ECM-receptor interaction
mmu05143 - African trypanosomiasis
mmu05145 - Toxoplasmosis
mmu05146 - Amoebiasis
mmu05200 - Pathways in cancer
mmu05222 - Small cell lung cancer

BioCarta from NCI Cancer Genome Anatomy Project
m_agrPathway - Agrin in Postsynaptic Differentiation

Reactome (by CSHL, EBI, and GO)

Protein P97927 (Reactome details) participates in the following event(s):

R-MMU-2426496 Laminins bind Nidogens 1, 2
R-MMU-2447193 Ntn4 binds laminin-gamma-1 and -3
R-NUL-2426616 Dystroglycan bind Laminins and Dystrophin
R-NUL-2467092 AGRN binds laminins
R-MMU-216058 Integrin alpha7beta1 binds Laminin-211, 221, 411, 512, 521
R-MMU-3907292 Integrin alpha6beta1 binds laminin-322, 512, 521, 211, 221, 411
R-MMU-2426528 Laminins:Nidogens binds HSPG2
R-MMU-8878599 Ssc5d binds ligands
R-MMU-2426450 Laminins:Nidogens binds collagen type IV networks
R-MMU-3000157 Laminin interactions
R-MMU-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: LAMA4_MOUSE, NM_010681, O88785, P70409, P97927, Q14BF2, uc007evq.1, uc007evq.2
UCSC ID: uc007evq.2
RefSeq Accession: NM_010681
Protein: P97927 (aka LAMA4_MOUSE or LMA4_MOUSE)
CCDS: CCDS35882.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.