Mouse Gene Smpdl3a (ENSMUST00000020022.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus sphingomyelin phosphodiesterase, acid-like 3A (Smpdl3a), mRNA. (from RefSeq NM_020561)
Gencode Transcript: ENSMUST00000020022.7
Gencode Gene: ENSMUSG00000019872.13
Transcript (Including UTRs)
Position: mm10 chr10:57,794,374-57,811,830 Size: 17,457 Total Exon Count: 8 Strand: +
Coding Region
Position: mm10 chr10:57,794,682-57,811,515 Size: 16,834 Coding Exon Count: 8
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: ASM3A_MOUSE
DESCRIPTION: RecName: Full=Acid sphingomyelinase-like phosphodiesterase 3a; Short=ASM-like phosphodiesterase 3a; EC=3.1.4.-; Flags: Precursor;
SUBCELLULAR LOCATION: Secreted (By similarity).SIMILARITY: Belongs to the acid sphingomyelinase family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR017064 - ASM-like_Pdiesterase_prd
IPR004843 - Metallo_PEstase_dom
Pfam Domains: PF00149 - Calcineurin-like phosphoesterase
SCOP Domains: 56300 - Metallo-dependent phosphatases
ModBase Predicted Comparative 3D Structure on P70158
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
Y08135 - M.musculus mRNA for ASM-like phosphodiesterase 3a.AK002455 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610010C24 product:acid sphingomyelinase-like phosphodiesterase 3a, full insert sequence.AK152282 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830058G20 product:sphingomyelin phosphodiesterase, acid-like 3A, full insert sequence.BC139288 - Mus musculus sphingomyelin phosphodiesterase, acid-like 3A, mRNA (cDNA clone MGC:170915 IMAGE:8862310), complete cds.BC139289 - Mus musculus sphingomyelin phosphodiesterase, acid-like 3A, mRNA (cDNA clone MGC:170916 IMAGE:8862311), complete cds.AK151683 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830033L07 product:sphingomyelin phosphodiesterase, acid-like 3A, full insert sequence.AK194592 - Mus musculus cDNA, clone:Y1G0115N04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK194580 - Mus musculus cDNA, clone:Y1G0115M11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK205531 - Mus musculus cDNA, clone:Y2G0102A05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK185060 - Mus musculus cDNA, clone:Y0G0132H15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK196251 - Mus musculus cDNA, clone:Y1G0121E07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK194237 - Mus musculus cDNA, clone:Y1G0114L08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK196668 - Mus musculus cDNA, clone:Y1G0122I16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.AK203180 - Mus musculus cDNA, clone:Y1G0144A22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020022, based on BLAT search.
Other Names for This Gene
Alternate Gene Symbols: ASM3A_MOUSE, Asml3a, NM_020561, P70158, Q3U8C2, uc007fcu.1, uc007fcu.2UCSC ID: uc007fcu.2RefSeq Accession: NM_020561
Protein: P70158
(aka ASM3A_MOUSE or AS3A_MOUSE)
CCDS: CCDS23857.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.