Mouse Gene Plppr3 (ENSMUST00000092325.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus phospholipid phosphatase related 3 (Plppr3), transcript variant 1, mRNA. (from RefSeq NM_181681)
Gencode Transcript: ENSMUST00000092325.10
Gencode Gene: ENSMUSG00000035835.14
Transcript (Including UTRs)
   Position: mm10 chr10:79,864,781-79,874,634 Size: 9,854 Total Exon Count: 7 Strand: -
Coding Region
   Position: mm10 chr10:79,864,856-79,874,094 Size: 9,239 Coding Exon Count: 7 

Page IndexSequence and LinksPrimersRNA StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:79,864,781-79,874,634)mRNA (may differ from genome)Protein (716 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -253.00540-0.469 Picture PostScript Text
3' UTR -17.6075-0.235 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  BC098099 - Mus musculus cDNA sequence BC005764, mRNA (cDNA clone MGC:106510 IMAGE:6813259), complete cds.
BC079534 - Mus musculus cDNA sequence BC005764, mRNA (cDNA clone IMAGE:6404908), partial cds.
BC057042 - Mus musculus cDNA sequence BC005764, mRNA (cDNA clone IMAGE:6819912), containing frame-shift errors.
BC066006 - Mus musculus cDNA sequence BC005764, mRNA (cDNA clone MGC:90138 IMAGE:6808849), complete cds.
BC005764 - Mus musculus cDNA sequence BC005764, mRNA (cDNA clone IMAGE:2648057), with apparent retained intron.
AF541278 - Mus musculus plasticity related gene 2 mRNA, complete cds.
AK144442 - Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched library, clone:G630068N01 product:Plasticity related gene 2, full insert sequence.
AK220474 - Mus musculus mRNA for mKIAA4076 protein.
AK083932 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130064L03 product:weakly similar to CDNA FLJ32103 FIS, CLONE OCBBF2001210, WEAKLY SIMILAR TO CAVIA PORCELLUS PHOSPHATIDIC ACID PHOSPHATASE 2A (PAP2A) MRNA [Homo sapiens], full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R3P9D0, NM_181681, uc007gaf.1
UCSC ID: uc007gaf.1
RefSeq Accession: NM_181681
CCDS: CCDS35971.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.