Mouse Gene Os9 (ENSMUST00000080975.5) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus amplified in osteosarcoma (Os9), transcript variant 2, mRNA. (from RefSeq NM_177614)
Gencode Transcript: ENSMUST00000080975.5
Gencode Gene: ENSMUSG00000040462.13
Transcript (Including UTRs)
   Position: mm10 chr10:127,095,650-127,121,125 Size: 25,476 Total Exon Count: 14 Strand: -
Coding Region
   Position: mm10 chr10:127,096,247-127,121,118 Size: 24,872 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:127,095,650-127,121,125)mRNA (may differ from genome)Protein (617 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: OS9_MOUSE
DESCRIPTION: RecName: Full=Protein OS-9; Flags: Precursor;
FUNCTION: Lectin which functions in endoplasmic reticulum (ER) quality control and ER-associated degradation (ERAD). May bind terminally misfolded non-glycosylated proteins as well as improperly folded glycoproteins, retain them in the ER, and possibly transfer them to the ubiquitination machinery and promote their degradation. Possible targets include TRPV4 (By similarity).
SUBUNIT: Probably part of the HRD1 ubiquitin ligase complex composed at least of SYVN1/HRD1 and SEL1L with which it interacts directly. Through this complex it may interact with ERLEC1 and HSPA5. Interacts with DERL2. Interacts with HSP90B1 and CREB3 (By similarity).
SUBCELLULAR LOCATION: Endoplasmic reticulum lumen (By similarity).
PTM: Intramolecular disulfide bonds (By similarity).
PTM: N-glycosylated.
SIMILARITY: Belongs to the OS-9 family.
SIMILARITY: Contains 1 PRKCSH domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -207.40597-0.347 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009011 - Man6P_isomerase_rcpt-bd_dom
IPR012913 - PRKCSH

Pfam Domains:
PF07915 - Glucosidase II beta subunit-like protein

SCOP Domains:
50911 - Mannose 6-phosphate receptor domain

ModBase Predicted Comparative 3D Structure on Q8K2C7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002020 protease binding
GO:0005515 protein binding
GO:0030246 carbohydrate binding

Biological Process:
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0006605 protein targeting
GO:0006621 protein retention in ER lumen
GO:0016567 protein ubiquitination
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process
GO:0030970 retrograde protein transport, ER to cytosol
GO:0034976 response to endoplasmic reticulum stress
GO:1904153 negative regulation of retrograde protein transport, ER to cytosol

Cellular Component:
GO:0000836 Hrd1p ubiquitin ligase complex
GO:0005783 endoplasmic reticulum
GO:0005788 endoplasmic reticulum lumen


-  Descriptions from all associated GenBank mRNAs
  LF198278 - JP 2014500723-A/5781: Polycomb-Associated Non-Coding RNAs.
AK205863 - Mus musculus cDNA, clone:Y2G0103A12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
BC006844 - Mus musculus amplified in osteosarcoma, mRNA (cDNA clone IMAGE:3598453), partial cds.
BC031768 - Mus musculus amplified in osteosarcoma, mRNA (cDNA clone MGC:25481 IMAGE:4487829), complete cds.
AK028047 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300007E20 product:similar to PROTEIN OS-9 PRECURSOR [Homo sapiens], full insert sequence.
LF225057 - JP 2014500723-A/32560: Polycomb-Associated Non-Coding RNAs.
AK210652 - Mus musculus cDNA, clone:Y2G0119C11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
AK216164 - Mus musculus cDNA, clone:Y2G0137G18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
AK185854 - Mus musculus cDNA, clone:Y0G0135H07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
LF225058 - JP 2014500723-A/32561: Polycomb-Associated Non-Coding RNAs.
LF225059 - JP 2014500723-A/32562: Polycomb-Associated Non-Coding RNAs.
AK179699 - Mus musculus cDNA, clone:Y0G0111G07, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
AK182062 - Mus musculus cDNA, clone:Y0G0120K17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
LF198280 - JP 2014500723-A/5783: Polycomb-Associated Non-Coding RNAs.
LF225062 - JP 2014500723-A/32565: Polycomb-Associated Non-Coding RNAs.
LF225063 - JP 2014500723-A/32566: Polycomb-Associated Non-Coding RNAs.
LF225065 - JP 2014500723-A/32568: Polycomb-Associated Non-Coding RNAs.
LF225066 - JP 2014500723-A/32569: Polycomb-Associated Non-Coding RNAs.
LF225068 - JP 2014500723-A/32571: Polycomb-Associated Non-Coding RNAs.
AK202873 - Mus musculus cDNA, clone:Y1G0142P21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038930, based on BLAT search.
LF225071 - JP 2014500723-A/32574: Polycomb-Associated Non-Coding RNAs.
LF225074 - JP 2014500723-A/32577: Polycomb-Associated Non-Coding RNAs.
LF225077 - JP 2014500723-A/32580: Polycomb-Associated Non-Coding RNAs.
LF225082 - JP 2014500723-A/32585: Polycomb-Associated Non-Coding RNAs.
LF225083 - JP 2014500723-A/32586: Polycomb-Associated Non-Coding RNAs.
LF225084 - JP 2014500723-A/32587: Polycomb-Associated Non-Coding RNAs.
LF225086 - JP 2014500723-A/32589: Polycomb-Associated Non-Coding RNAs.
LF225087 - JP 2014500723-A/32590: Polycomb-Associated Non-Coding RNAs.
MA433855 - JP 2018138019-A/5781: Polycomb-Associated Non-Coding RNAs.
MA460634 - JP 2018138019-A/32560: Polycomb-Associated Non-Coding RNAs.
MA460635 - JP 2018138019-A/32561: Polycomb-Associated Non-Coding RNAs.
MA460636 - JP 2018138019-A/32562: Polycomb-Associated Non-Coding RNAs.
MA433857 - JP 2018138019-A/5783: Polycomb-Associated Non-Coding RNAs.
MA460639 - JP 2018138019-A/32565: Polycomb-Associated Non-Coding RNAs.
MA460640 - JP 2018138019-A/32566: Polycomb-Associated Non-Coding RNAs.
MA460642 - JP 2018138019-A/32568: Polycomb-Associated Non-Coding RNAs.
MA460643 - JP 2018138019-A/32569: Polycomb-Associated Non-Coding RNAs.
MA460645 - JP 2018138019-A/32571: Polycomb-Associated Non-Coding RNAs.
MA460648 - JP 2018138019-A/32574: Polycomb-Associated Non-Coding RNAs.
MA460651 - JP 2018138019-A/32577: Polycomb-Associated Non-Coding RNAs.
MA460654 - JP 2018138019-A/32580: Polycomb-Associated Non-Coding RNAs.
MA460659 - JP 2018138019-A/32585: Polycomb-Associated Non-Coding RNAs.
MA460660 - JP 2018138019-A/32586: Polycomb-Associated Non-Coding RNAs.
MA460661 - JP 2018138019-A/32587: Polycomb-Associated Non-Coding RNAs.
MA460663 - JP 2018138019-A/32589: Polycomb-Associated Non-Coding RNAs.
MA460664 - JP 2018138019-A/32590: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04141 - Protein processing in endoplasmic reticulum

Reactome (by CSHL, EBI, and GO)

Protein Q8K2C7 (Reactome details) participates in the following event(s):

R-MMU-5362437 C-terminal Hh fragments are bound by lectins
R-MMU-5362459 VCP-catalyzed ATP hydrolysis promotes the translocation of Hh-C into the cytosol
R-MMU-1022127 OS9:SEL1:ERAD E3 ligase:DERL2 transports Ub-unfolded protein:(GlcNAc)2 (Man)9-5 from ERQC to cytosol
R-MMU-8867288 OS9:SEL1:ERAD E3 ligase:DERL2 ubiquitinates unfolded protein:(GlcNAc)2 (Man)9-5
R-MMU-5362441 C-terminal Hh fragments are recruited to SEL1:SYVN1 at the ER membrane
R-MMU-5362412 SYVN1 ubiquitinates Hh C-terminal fragments
R-MMU-8866551 CFTR binds components of the ERAD machinery for ubiquitination and degradation
R-MMU-8866542 VCP-catalyzed ATP hydrolysis promotes the translocation of misfolded CFTR into the cytosol
R-MMU-8866546 RNF5 and RNF185 ubiquitinate misfolded CFTR
R-MMU-5358346 Hedgehog ligand biogenesis
R-MMU-901032 ER Quality Control Compartment (ERQC)
R-MMU-382556 ABC-family proteins mediated transport
R-MMU-5358351 Signaling by Hedgehog
R-MMU-901042 Calnexin/calreticulin cycle
R-MMU-382551 Transport of small molecules
R-MMU-162582 Signal Transduction
R-MMU-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-MMU-446203 Asparagine N-linked glycosylation
R-MMU-597592 Post-translational protein modification
R-MMU-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: NM_177614, OS9_MOUSE, Q8K2C7, uc007hhz.1, uc007hhz.2, uc007hhz.3
UCSC ID: uc007hhz.3
RefSeq Accession: NM_177614
Protein: Q8K2C7 (aka OS9_MOUSE)
CCDS: CCDS24229.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.