Mouse Gene Cd63 (ENSMUST00000219317.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Cd63 (from geneSymbol)
Gencode Transcript: ENSMUST00000219317.1
Gencode Gene: ENSMUSG00000025351.14
Transcript (Including UTRs)
Position: mm10 chr10:128,900,989-128,912,822 Size: 11,834 Total Exon Count: 9 Strand: +
Coding Region
Position: mm10 chr10:128,910,406-128,912,740 Size: 2,335 Coding Exon Count: 7
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR000301 - Tetraspanin
IPR018499 - Tetraspanin/Peripherin
IPR018503 - Tetraspanin_CS
IPR008952 - Tetraspanin_EC2
Pfam Domains: PF00335 - Tetraspanin family
SCOP Domains: 48652 - Tetraspanin
ModBase Predicted Comparative 3D Structure on Q549D0
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF198329 - JP 2014500723-A/5832: Polycomb-Associated Non-Coding RNAs.BC083161 - Mus musculus CD63 antigen, mRNA (cDNA clone MGC:103180 IMAGE:6530532), complete cds.AK150647 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830013C09 product:Cd63 antigen, full insert sequence.AK170344 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630049B10 product:Cd63 antigen, full insert sequence.AK146618 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920035F01 product:Cd63 antigen, full insert sequence.AK151702 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830034K07 product:Cd63 antigen, full insert sequence.AK152372 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830067F14 product:Cd63 antigen, full insert sequence.AK159875 - Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420036E06 product:Cd63 antigen, full insert sequence.AK163785 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130024F04 product:Cd63 antigen, full insert sequence.AK166543 - Mus musculus cDNA, RIKEN full-length enriched library, clone:I0C0012L21 product:Cd63 antigen, full insert sequence.AK152072 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830047B21 product:Cd63 antigen, full insert sequence.AK166766 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0010A18 product:Cd63 antigen, full insert sequence.BC008108 - Mus musculus CD63 antigen, mRNA (cDNA clone MGC:7123 IMAGE:3157993), complete cds.BC012212 - Mus musculus CD63 antigen, mRNA (cDNA clone MGC:6087 IMAGE:3157993), complete cds.AK166373 - Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930003J03 product:Cd63 antigen, full insert sequence.D16432 - Mus musculus mRNA for CD63/ME491, complete cds.AK028220 - Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810024G22 product:Cd63 antigen, full insert sequence.AK151963 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830044B09 product:Cd63 antigen, full insert sequence.BC089543 - Mus musculus CD63 antigen, mRNA (cDNA clone IMAGE:30284264).AF159427 - Mus musculus tetraspanin membrane protein CD63 mRNA, complete cds.LF225549 - JP 2014500723-A/33052: Polycomb-Associated Non-Coding RNAs.CT010179 - Mus musculus full open reading frame cDNA clone RZPDo836C0250D for gene Cd63, Cd63 antigen; complete cds, incl. stopcodon.LF255111 - JP 2014500723-A/62614: Polycomb-Associated Non-Coding RNAs.LF225551 - JP 2014500723-A/33054: Polycomb-Associated Non-Coding RNAs.AK208438 - Mus musculus cDNA, clone:Y2G0111F12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK178582 - Mus musculus cDNA, clone:Y0G0107E03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK188949 - Mus musculus cDNA, clone:Y0G0147B06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK216882 - Mus musculus cDNA, clone:Y2G0139O06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK210314 - Mus musculus cDNA, clone:Y2G0118A02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK182243 - Mus musculus cDNA, clone:Y0G0121F11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.LF225552 - JP 2014500723-A/33055: Polycomb-Associated Non-Coding RNAs.LF255112 - JP 2014500723-A/62615: Polycomb-Associated Non-Coding RNAs.LF225553 - JP 2014500723-A/33056: Polycomb-Associated Non-Coding RNAs.LF225554 - JP 2014500723-A/33057: Polycomb-Associated Non-Coding RNAs.LF255113 - JP 2014500723-A/62616: Polycomb-Associated Non-Coding RNAs.LF225555 - JP 2014500723-A/33058: Polycomb-Associated Non-Coding RNAs.AK178060 - Mus musculus cDNA, clone:Y0G0105E11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK188607 - Mus musculus cDNA, clone:Y0G0145N16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK211715 - Mus musculus cDNA, clone:Y2G0122K02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.LF255114 - JP 2014500723-A/62617: Polycomb-Associated Non-Coding RNAs.AK184072 - Mus musculus cDNA, clone:Y0G0128H13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK184717 - Mus musculus cDNA, clone:Y0G0131E14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.AK180551 - Mus musculus cDNA, clone:Y0G0114M21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026407, based on BLAT search.LF225556 - JP 2014500723-A/33059: Polycomb-Associated Non-Coding RNAs.LF225557 - JP 2014500723-A/33060: Polycomb-Associated Non-Coding RNAs.MA433906 - JP 2018138019-A/5832: Polycomb-Associated Non-Coding RNAs.MA461126 - JP 2018138019-A/33052: Polycomb-Associated Non-Coding RNAs.MA461128 - JP 2018138019-A/33054: Polycomb-Associated Non-Coding RNAs.MA461129 - JP 2018138019-A/33055: Polycomb-Associated Non-Coding RNAs.MA461130 - JP 2018138019-A/33056: Polycomb-Associated Non-Coding RNAs.MA461131 - JP 2018138019-A/33057: Polycomb-Associated Non-Coding RNAs.MA461132 - JP 2018138019-A/33058: Polycomb-Associated Non-Coding RNAs.MA461133 - JP 2018138019-A/33059: Polycomb-Associated Non-Coding RNAs.MA461134 - JP 2018138019-A/33060: Polycomb-Associated Non-Coding RNAs.MA490688 - JP 2018138019-A/62614: Polycomb-Associated Non-Coding RNAs.MA490689 - JP 2018138019-A/62615: Polycomb-Associated Non-Coding RNAs.MA490690 - JP 2018138019-A/62616: Polycomb-Associated Non-Coding RNAs.MA490691 - JP 2018138019-A/62617: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu04142 - Lysosome
Other Names for This Gene
Alternate Gene Symbols: BC083161, mCG_18675, Q549D0, Q549D0_MOUSE, uc007hou.1, uc007hou.2, uc007hou.3UCSC ID: uc007hou.3RefSeq Accession: NM_001042580
Protein: Q549D0
CCDS: CCDS24297.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.