Mouse Gene Il9r (ENSMUST00000145401.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus interleukin 9 receptor (Il9r), transcript variant 2, mRNA. (from RefSeq NM_008374)
Gencode Transcript: ENSMUST00000145401.7
Gencode Gene: ENSMUSG00000020279.10
Transcript (Including UTRs)
   Position: mm10 chr11:32,187,541-32,200,222 Size: 12,682 Total Exon Count: 9 Strand: -
Coding Region
   Position: mm10 chr11:32,190,612-32,200,218 Size: 9,607 Coding Exon Count: 9 

Page IndexSequence and LinksPrimersCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:32,187,541-32,200,222)mRNA (may differ from genome)Protein (468 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -980.403071-0.319 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR003531 - Hempt_rcpt_S_F1_CS
IPR013783 - Ig-like_fold

SCOP Domains:
49265 - Fibronectin type III

ModBase Predicted Comparative 3D Structure on Q78PA5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsembl   
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004896 cytokine receptor activity

Biological Process:
GO:0019221 cytokine-mediated signaling pathway

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  M84746 - Mouse interleukin 9 receptor mRNA, complete cds.
AK088694 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430023N04 product:interleukin 9 receptor, full insert sequence.
BC111909 - Mus musculus interleukin 9 receptor, mRNA (cDNA clone MGC:130502 IMAGE:40046258), complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04060 - Cytokine-cytokine receptor interaction
mmu04630 - Jak-STAT signaling pathway
mmu04640 - Hematopoietic cell lineage

-  Other Names for This Gene
  Alternate Gene Symbols: interleukin 9 receptor, NM_008374, Q78PA5, Q78PA5_MOUSE, RP23-177M10.1-001, uc007iix.1, uc007iix.2, uc007iix.3
UCSC ID: uc007iix.3
RefSeq Accession: NM_008374
Protein: Q78PA5 CCDS: CCDS24517.1, CCDS48765.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.