Mouse Gene Atad5 (ENSMUST00000017694.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus ATPase family, AAA domain containing 5 (Atad5), mRNA. (from RefSeq NM_001029856)
Gencode Transcript: ENSMUST00000017694.6
Gencode Gene: ENSMUSG00000017550.14
Transcript (Including UTRs)
   Position: mm10 chr11:80,089,400-80,135,791 Size: 46,392 Total Exon Count: 23 Strand: +
Coding Region
   Position: mm10 chr11:80,089,771-80,134,371 Size: 44,601 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:80,089,400-80,135,791)mRNA (may differ from genome)Protein (1826 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: ATAD5_MOUSE
DESCRIPTION: RecName: Full=ATPase family AAA domain-containing protein 5; AltName: Full=Chromosome fragility-associated gene 1 protein;
FUNCTION: Involved in DNA damage response. Involved in a RAD9A- related damage checkpoint, a pathway that is important in determining whether DNA damage is compatible with cell survival or whether it requires cell elimination by apoptosis. Modulates the RAD9A interaction with BCL2 and thereby induces DNA damages- induced apoptosis.
SUBUNIT: Interacts with RB1 predominantly in G1 phase via its LXCXE motif. Interacts with RAD9A in growing cells. The interaction with RAD9A is reduced after exposure to DNA replication-inhibiting agents.
SUBCELLULAR LOCATION: Nucleus (Potential).
TISSUE SPECIFICITY: Expressed ubiquitously in all cell lines like teratocarcinoma, cell lymphoma, lymphoma.
INDUCTION: Down-regulated by DNA replication-inhibiting agents.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR. ATR may stimulate the RAD9A dissociation (By similarity).
SIMILARITY: Belongs to the AAA ATPase family.
SEQUENCE CAUTION: Sequence=AAH38279.2; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=CAI24765.1; Type=Erroneous gene model prediction; Sequence=CAI25200.1; Type=Erroneous gene model prediction; Sequence=CAI26037.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -172.60371-0.465 Picture PostScript Text
3' UTR -320.001420-0.225 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003593 - AAA+_ATPase
IPR003959 - ATPase_AAA_core

Pfam Domains:
PF00004 - ATPase family associated with various cellular activities (AAA)

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q4QY64
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003674 molecular_function
GO:0005524 ATP binding

Biological Process:
GO:0002377 immunoglobulin production
GO:0006974 cellular response to DNA damage stimulus
GO:0030890 positive regulation of B cell proliferation
GO:0048304 positive regulation of isotype switching to IgG isotypes
GO:1901990 regulation of mitotic cell cycle phase transition

Cellular Component:
GO:0005575 cellular_component
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  LF198714 - JP 2014500723-A/6217: Polycomb-Associated Non-Coding RNAs.
BC038279 - Mus musculus ATPase family, AAA domain containing 5, mRNA (cDNA clone IMAGE:4484010), partial cds.
AK053857 - Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130315D19 product:Weakly similar to ATP/GTP-binding protein (Fragment) homolog [Mus musculus], full insert sequence.
AK085211 - Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530018B22 product:weakly similar to ATP/GTP-BINDING PROTEIN [Homo sapiens], full insert sequence.
AY557610 - Mus musculus chromosome fragility associated gene 1 mRNA, complete cds.
AK165945 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730022D23 product:Weakly similar to ATP/GTP-binding protein (Fragment), full insert sequence.
AK048355 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130052G03 product:weakly similar to ATP/GTP-BINDING PROTEIN [Homo sapiens], full insert sequence.
AK032814 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720457E16 product:Weakly similar to ATP/GTP-binding protein (Fragment) homolog [Mus musculus], full insert sequence.
BC141180 - Mus musculus ATPase family, AAA domain containing 5, mRNA (cDNA clone MGC:176141 IMAGE:9055792), complete cds.
BC160289 - Synthetic construct Mus musculus clone IMAGE:100064033, MGC:193404 ATPase family, AAA domain containing 5 (Atad5) mRNA, encodes complete protein.
LF229318 - JP 2014500723-A/36821: Polycomb-Associated Non-Coding RNAs.
LF229319 - JP 2014500723-A/36822: Polycomb-Associated Non-Coding RNAs.
LF229320 - JP 2014500723-A/36823: Polycomb-Associated Non-Coding RNAs.
LF229321 - JP 2014500723-A/36824: Polycomb-Associated Non-Coding RNAs.
LF229322 - JP 2014500723-A/36825: Polycomb-Associated Non-Coding RNAs.
LF229323 - JP 2014500723-A/36826: Polycomb-Associated Non-Coding RNAs.
LF229324 - JP 2014500723-A/36827: Polycomb-Associated Non-Coding RNAs.
LF229326 - JP 2014500723-A/36829: Polycomb-Associated Non-Coding RNAs.
LF229327 - JP 2014500723-A/36830: Polycomb-Associated Non-Coding RNAs.
BC046463 - Mus musculus RIKEN cDNA C130052G03 gene, mRNA (cDNA clone IMAGE:3494995).
LF229332 - JP 2014500723-A/36835: Polycomb-Associated Non-Coding RNAs.
LF229334 - JP 2014500723-A/36837: Polycomb-Associated Non-Coding RNAs.
LF229336 - JP 2014500723-A/36839: Polycomb-Associated Non-Coding RNAs.
AK136531 - Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130026L14 product:hypothetical protein, full insert sequence.
LF229346 - JP 2014500723-A/36849: Polycomb-Associated Non-Coding RNAs.
LF229347 - JP 2014500723-A/36850: Polycomb-Associated Non-Coding RNAs.
AK079959 - Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530025L21 product:unclassifiable, full insert sequence.
MA434291 - JP 2018138019-A/6217: Polycomb-Associated Non-Coding RNAs.
MA464895 - JP 2018138019-A/36821: Polycomb-Associated Non-Coding RNAs.
MA464896 - JP 2018138019-A/36822: Polycomb-Associated Non-Coding RNAs.
MA464897 - JP 2018138019-A/36823: Polycomb-Associated Non-Coding RNAs.
MA464898 - JP 2018138019-A/36824: Polycomb-Associated Non-Coding RNAs.
MA464899 - JP 2018138019-A/36825: Polycomb-Associated Non-Coding RNAs.
MA464900 - JP 2018138019-A/36826: Polycomb-Associated Non-Coding RNAs.
MA464901 - JP 2018138019-A/36827: Polycomb-Associated Non-Coding RNAs.
MA464903 - JP 2018138019-A/36829: Polycomb-Associated Non-Coding RNAs.
MA464904 - JP 2018138019-A/36830: Polycomb-Associated Non-Coding RNAs.
MA464909 - JP 2018138019-A/36835: Polycomb-Associated Non-Coding RNAs.
MA464911 - JP 2018138019-A/36837: Polycomb-Associated Non-Coding RNAs.
MA464913 - JP 2018138019-A/36839: Polycomb-Associated Non-Coding RNAs.
MA464923 - JP 2018138019-A/36849: Polycomb-Associated Non-Coding RNAs.
MA464924 - JP 2018138019-A/36850: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ATAD5_MOUSE, Frag1, NM_001029856, Q3TMG5, Q3UW85, Q3V306, Q3V3T9, Q4QY64, Q5SSK4, Q8BUH4, Q8CGG7, uc007klg.1, uc007klg.2
UCSC ID: uc007klg.2
RefSeq Accession: NM_001029856
Protein: Q4QY64 (aka ATAD5_MOUSE)
CCDS: CCDS25127.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.