Mouse Gene Slc16a3 (ENSMUST00000070653.12) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus solute carrier family 16 (monocarboxylic acid transporters), member 3 (Slc16a3), mRNA. (from RefSeq NM_030696)
Gencode Transcript: ENSMUST00000070653.12
Gencode Gene: ENSMUSG00000025161.16
Transcript (Including UTRs)
Position: mm10 chr11:120,948,480-120,958,775 Size: 10,296 Total Exon Count: 6 Strand: +
Coding Region
Position: mm10 chr11:120,955,247-120,958,132 Size: 2,886 Coding Exon Count: 4
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR011701 - MFS
IPR020846 - MFS_dom
IPR016196 - MFS_dom_general_subst_transpt
IPR004743 - Monocarb_transpt
Pfam Domains: PF07690 - Major Facilitator Superfamily
SCOP Domains: 53067 - Actin-like ATPase domain
103473 - MFS general substrate transporter
ModBase Predicted Comparative 3D Structure on Q3UDP9
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC046525 - Mus musculus solute carrier family 16 (monocarboxylic acid transporters), member 3, mRNA (cDNA clone MGC:51666 IMAGE:5319754), complete cds.AK149707 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530011J24 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AK149983 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530112G22 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AK141381 - Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430044D20 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AK171260 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630318M11 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AK166048 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730030P11 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AK169917 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630004E21 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AK165596 - Mus musculus RCB-0035 WEHI-3 cDNA, RIKEN full-length enriched library, clone:G430039A17 product:solute carrier family 16 (monocarboxylic acid transporters), member 3, full insert sequence.AF178954 - Mus musculus monocarboxylate transporter 4 mRNA, complete cds.
Other Names for This Gene
Alternate Gene Symbols: mCG_2155, NM_030696, Q3UDP9, Q3UDP9_MOUSE, RP23-378G22.1-001, uc007muw.1, uc007muw.2UCSC ID: uc007muw.2RefSeq Accession: NM_030696
Protein: Q3UDP9
CCDS: CCDS25761.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.