Mouse Gene Abcb5 (ENSMUST00000100982.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Abcb5 (from geneSymbol)
Gencode Transcript: ENSMUST00000100982.4
Gencode Gene: ENSMUSG00000072791.11
Transcript (Including UTRs)
   Position: mm10 chr12:118,886,618-118,924,580 Size: 37,963 Total Exon Count: 10 Strand: -


Page IndexSequence and LinksPrimersCTDOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:118,886,618-118,924,580)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneCardsPubMedSOURCEWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JQ655148 - Mus musculus P-glycoprotein (Abcb5) mRNA, complete cds.
AY766239 - Mus musculus ATP-binding cassette sub-family B member 5 variant (Abcb5) mRNA, complete cds.
AY766238 - Mus musculus ATP-binding cassette sub-family B member 5 variant (Abcb5) mRNA, complete cds.
AK139832 - Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020023O04 product:hypothetical ABC transporter containing protein, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu02010 - ABC transporters

-  Other Names for This Gene
  Alternate Gene Symbols: AK139832, uc007pii.1, uc007pii.2
UCSC ID: uc007pii.2
RefSeq Accession: NM_029961

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.