Mouse Gene Chrm3 (ENSMUST00000187510.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus cholinergic receptor, muscarinic 3, cardiac (Chrm3), mRNA. (from RefSeq NM_033269)
Gencode Transcript: ENSMUST00000187510.6
Gencode Gene: ENSMUSG00000046159.16
Transcript (Including UTRs)
   Position: mm10 chr13:9,875,486-10,360,844 Size: 485,359 Total Exon Count: 5 Strand: -
Coding Region
   Position: mm10 chr13:9,877,229-9,878,998 Size: 1,770 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:9,875,486-10,360,844)mRNA (may differ from genome)Protein (589 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: ACM3_MOUSE
DESCRIPTION: RecName: Full=Muscarinic acetylcholine receptor M3; AltName: Full=Mm3 mAChR;
FUNCTION: The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins. Primary transducing effect is Pi turnover.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity). Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein (By similarity). Basolateral cell membrane; Multi-pass membrane protein (By similarity).
SIMILARITY: Belongs to the G-protein coupled receptor 1 family. Muscarinic acetylcholine receptor subfamily. CHRM3 sub-subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -326.60823-0.397 Picture PostScript Text
3' UTR -520.701743-0.299 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR001183 - Musac_M3_rcpt
IPR000995 - Musac_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx
PF10328 - Serpentine type 7TM GPCR chemoreceptor Srx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q9ERZ3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0005085 guanyl-nucleotide exchange factor activity
GO:0005515 protein binding
GO:0008144 drug binding
GO:0016907 G-protein coupled acetylcholine receptor activity
GO:0042166 acetylcholine binding

Biological Process:
GO:0003056 regulation of vascular smooth muscle contraction
GO:0006939 smooth muscle contraction
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007197 adenylate cyclase-inhibiting G-protein coupled acetylcholine receptor signaling pathway
GO:0007213 G-protein coupled acetylcholine receptor signaling pathway
GO:0007271 synaptic transmission, cholinergic
GO:0019229 regulation of vasoconstriction
GO:0045987 positive regulation of smooth muscle contraction
GO:0046541 saliva secretion

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane
GO:0030054 cell junction
GO:0030425 dendrite
GO:0032279 asymmetric synapse
GO:0043679 axon terminus
GO:0045202 synapse
GO:0045211 postsynaptic membrane


-  Descriptions from all associated GenBank mRNAs
  AK080950 - Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430217G05 product:MUSCARINIC ACETYLCHOLINE RECEPTOR M3 (MM3 MACHR), full insert sequence.
BC129893 - Mus musculus cholinergic receptor, muscarinic 3, cardiac, mRNA (cDNA clone MGC:150259 IMAGE:40111499), complete cds.
BC129892 - Mus musculus cholinergic receptor, muscarinic 3, cardiac, mRNA (cDNA clone MGC:150258 IMAGE:40111498), complete cds.
AK051841 - Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230008K23 product:unclassifiable, full insert sequence.
S74908 - Mus sp. Mm3 muscarinic acetylcholine receptor mRNA, partial cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04020 - Calcium signaling pathway
mmu04080 - Neuroactive ligand-receptor interaction
mmu04810 - Regulation of actin cytoskeleton
mmu04970 - Salivary secretion
mmu04971 - Gastric acid secretion
mmu04972 - Pancreatic secretion

Reactome (by CSHL, EBI, and GO)

Protein Q9ERZ3 (Reactome details) participates in the following event(s):

R-MMU-426560 Binding of Acetylcholine by Muscarinic Acetylcholine Receptor M3
R-MMU-390649 M1, M3 and M5 receptors bind acetylcholine
R-MMU-426547 Activation of Gq by Muscarinic Acetylcholine Receptor M3
R-MMU-749452 The Ligand:GPCR:Gq complex dissociates
R-MMU-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-MMU-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-MMU-390648 Muscarinic acetylcholine receptors
R-MMU-416476 G alpha (q) signalling events
R-MMU-375280 Amine ligand-binding receptors
R-MMU-388396 GPCR downstream signalling
R-MMU-373076 Class A/1 (Rhodopsin-like receptors)
R-MMU-372790 Signaling by GPCR
R-MMU-500792 GPCR ligand binding
R-MMU-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ACM3_MOUSE, Chrm-3, NM_033269, Q64055, Q9ERZ3, uc007plb.1, uc007plb.2
UCSC ID: uc007plb.2
RefSeq Accession: NM_033269
Protein: Q9ERZ3 (aka ACM3_MOUSE)
CCDS: CCDS26238.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.