Mouse Gene Catsper3 (ENSMUST00000109898.2) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus cation channel, sperm associated 3 (Catsper3), transcript variant 2, mRNA. (from RefSeq NM_029772)
Gencode Transcript: ENSMUST00000109898.2
Gencode Gene: ENSMUSG00000021499.12
Transcript (Including UTRs)
   Position: mm10 chr13:55,784,579-55,808,998 Size: 24,420 Total Exon Count: 8 Strand: +
Coding Region
   Position: mm10 chr13:55,784,662-55,808,919 Size: 24,258 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:55,784,579-55,808,998)mRNA (may differ from genome)Protein (382 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: CTSR3_MOUSE
DESCRIPTION: RecName: Full=Cation channel sperm-associated protein 3; Short=CatSper3;
FUNCTION: Voltage-gated calcium channel that plays a central role in sperm cell hyperactivation. Controls calcium entry to mediate the hyperactivated motility, a step needed for sperm motility which is essential late in the preparation of sperm for fertilization. Activated by intracellular alkalinization. Contrary to the human ortholog, not activated by progesterone.
SUBUNIT: Heterotetramer; possibly composed of CATSPER1, CATSPER2, CATSPER3 and CATSPER4 (Potential). Component of the CatSper complex. Interacts with CATSPER1.
SUBCELLULAR LOCATION: Cell projection, cilium, flagellum membrane; Multi-pass membrane protein. Note=Specifically located in the principal piece of sperm tail.
TISSUE SPECIFICITY: Testis-specific.
DEVELOPMENTAL STAGE: Detected in hte testis during postnatal development at day 15. Restricted to the late-stage germline cells that line the seminiferous tubules.
DISRUPTION PHENOTYPE: Mice are normal but males are sterile. Male sterility is due to defects in sperm motility unability to fertilize intact eggs.
SIMILARITY: Belongs to the cation channel sperm-associated (TC 1.A.1.19) family.
SEQUENCE CAUTION: Sequence=AAH89518.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.2083-0.123 Picture PostScript Text
3' UTR -21.0079-0.266 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005821 - Ion_trans_dom

Pfam Domains:
PF00520 - Ion transport protein
PF08016 - Polycystin cation channel

SCOP Domains:
47986 - DEATH domain
81324 - Voltage-gated potassium channels

ModBase Predicted Comparative 3D Structure on Q80W99
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005216 ion channel activity
GO:0005244 voltage-gated ion channel activity
GO:0005245 voltage-gated calcium channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding

Biological Process:
GO:0006811 ion transport
GO:0006814 sodium ion transport
GO:0006816 calcium ion transport
GO:0007275 multicellular organism development
GO:0007283 spermatogenesis
GO:0030154 cell differentiation
GO:0030317 flagellated sperm motility
GO:0034765 regulation of ion transmembrane transport
GO:0048240 sperm capacitation
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0086010 membrane depolarization during action potential

Cellular Component:
GO:0001669 acrosomal vesicle
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0005929 cilium
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031514 motile cilium
GO:0036128 CatSper complex
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  BC089518 - Mus musculus cation channel, sperm associated 3, mRNA (cDNA clone MGC:107210 IMAGE:6774298), complete cds.
AK014942 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921522D01 product:hypothetical Cation channels (non-ligand gated) containing protein, full insert sequence.
AY263400 - Mus musculus putative ion channel CatSper4 mRNA, complete cds.
HM179540 - Mus musculus cation channel sperm-associated protein 3 transcript variant 1 (Catsper3) mRNA, complete cds, alternatively spliced.
HM179541 - Mus musculus cation channel sperm-associated protein 3 transcript variant 3 (Catsper3) mRNA, complete cds, alternatively spliced.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q80W99 (Reactome details) participates in the following event(s):

R-MMU-2534388 Progesterone Activation Of CatSper
R-MMU-2534359 CatSper Channel Mediated Calcium Transport
R-MMU-1300642 Sperm Motility And Taxes
R-MMU-1187000 Fertilization
R-MMU-1474165 Reproduction

-  Other Names for This Gene
  Alternate Gene Symbols: CTSR3_MOUSE, NM_029772, Q5FWA9, Q80W99, Q9D5T9, uc007qsb.1, uc007qsb.2, uc007qsb.3
UCSC ID: uc007qsb.3
RefSeq Accession: NM_029772
Protein: Q80W99 (aka CTSR3_MOUSE)
CCDS: CCDS26555.1, CCDS56885.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.