Mouse Gene Nsun2 (ENSMUST00000109699.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus NOL1/NOP2/Sun domain family member 2 (Nsun2), mRNA. (from RefSeq NM_145354)
Gencode Transcript: ENSMUST00000109699.10
Gencode Gene: ENSMUSG00000021595.18
Transcript (Including UTRs)
   Position: mm10 chr13:69,612,016-69,634,334 Size: 22,319 Total Exon Count: 19 Strand: +
Coding Region
   Position: mm10 chr13:69,612,093-69,633,851 Size: 21,759 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:69,612,016-69,634,334)mRNA (may differ from genome)Protein (757 aa)
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-  Comments and Description Text from UniProtKB
  ID: NSUN2_MOUSE
DESCRIPTION: RecName: Full=tRNA (cytosine(34)-C(5))-methyltransferase; EC=2.1.1.203; AltName: Full=Myc-induced SUN domain-containing protein; Short=Misu; AltName: Full=NOL1/NOP2/Sun domain family member 2;
FUNCTION: RNA methyltransferase that methylates tRNAs, and possibly RNA polymerase III transcripts. Methylates cytosine to 5- methylcytosine (m5C) at position 34 of intron-containing tRNA(Leu)(CAA) precursors. Not able to modify tRNAs at positions 48 or 49 (By similarity). May act downstream of Myc to regulate epidermal cell growth and proliferation. Required for proper spindle assembly and chromosome segregation, independently of its methyltransferase activity.
CATALYTIC ACTIVITY: S-adenosyl-L-methionine + cytosine(34) in tRNA precursor = S-adenosyl-L-homocysteine + 5-methylcytosine(34) in tRNA precursor.
SUBUNIT: Interacts with NPM1 and NCL during interphase; interaction is disrupted following phosphorylation at Ser-139 (By similarity).
SUBCELLULAR LOCATION: Nucleus, nucleolus. Cytoplasm, cytoskeleton, spindle. Note=Concentrated in the nucleolus during interphase and translocates to the spindle during mitosis as an RNA-protein complex that includes 18S ribosomal RNA.
TISSUE SPECIFICITY: Ubiquitously expressed at low level. Up- regulated in tumors.
DEVELOPMENTAL STAGE: In G1, it is predominantly found in the nucleol. During S phase, it is present at its highest level and is distributed more uniformly throughout the nucleus (at protein level).
INDUCTION: By Myc (at protein level).
PTM: Phosphorylated at Ser-139 by AURKB during mitosis, leading to abolish methyltransferase activity and the interaction with NPM1 (By similarity).
SIMILARITY: Belongs to the methyltransferase superfamily. RsmB/NOP family. TRM4 subfamily.
SEQUENCE CAUTION: Sequence=AAH13625.1; Type=Erroneous initiation; Sequence=BAC36110.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.8077-0.387 Picture PostScript Text
3' UTR -144.20483-0.299 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001678 - Fmu/NOL1/Nop2p
IPR023267 - RCMT
IPR023270 - RCMT_NCL1

Pfam Domains:
PF01189 - 16S rRNA methyltransferase RsmB/F

SCOP Domains:
53335 - S-adenosyl-L-methionine-dependent methyltransferases

ModBase Predicted Comparative 3D Structure on Q1HFZ0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details    Gene Details
Gene Sorter    Gene Sorter
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Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0008168 methyltransferase activity
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 transferase activity

Biological Process:
GO:0007049 cell cycle
GO:0007286 spermatid development
GO:0008033 tRNA processing
GO:0030488 tRNA methylation
GO:0032259 methylation
GO:0033313 meiotic cell cycle checkpoint
GO:0048820 hair follicle maturation
GO:0051301 cell division

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0033391 chromatoid body


-  Descriptions from all associated GenBank mRNAs
  KY499682 - Mus musculus strain C57BL/6J hypothetical protein mRNA, complete cds.
AK154789 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630106M01 product:Hypothetical NOL1/NOP2/sun family containing protein, full insert sequence.
DQ490066 - Mus musculus Myc-induced SUN domain containing protein (Misu) mRNA, complete cds.
AK171399 - Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730203D01 product:Hypothetical NOL1/NOP2/sun family containing protein homolog [Mus musculus], full insert sequence.
BC025549 - Mus musculus NOL1/NOP2/Sun domain family member 2, mRNA (cDNA clone IMAGE:5320805), partial cds.
AK150631 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830012O15 product:Hypothetical NOL1/NOP2/sun family containing protein, full insert sequence.
AK151917 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830042N16 product:Hypothetical NOL1/NOP2/sun family containing protein, full insert sequence.
AK030124 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932443I04 product:hypothetical NOL1/NOP2/sun family containing protein, full insert sequence.
AK197440 - Mus musculus cDNA, clone:Y1G0125B22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK215502 - Mus musculus cDNA, clone:Y2G0135E05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK188384 - Mus musculus cDNA, clone:Y0G0144P15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
BC013625 - Mus musculus NOL1/NOP2/Sun domain family member 2, mRNA (cDNA clone MGC:18985 IMAGE:4011674), complete cds.
AK206316 - Mus musculus cDNA, clone:Y2G0104H05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK207012 - Mus musculus cDNA, clone:Y2G0106K13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK186941 - Mus musculus cDNA, clone:Y0G0139E16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK199733 - Mus musculus cDNA, clone:Y1G0132D16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK208749 - Mus musculus cDNA, clone:Y2G0112K01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
BC023735 - Mus musculus NOL1/NOP2/Sun domain family 2, mRNA (cDNA clone IMAGE:5352567).
AK075999 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610020M15 product:DNA segment, Chr 13, Wayne State University 123, expressed, full insert sequence.
AK205395 - Mus musculus cDNA, clone:Y2G0101I17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK206159 - Mus musculus cDNA, clone:Y2G0103O21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK191741 - Mus musculus cDNA, clone:Y1G0106N01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK202255 - Mus musculus cDNA, clone:Y1G0140N20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK201163 - Mus musculus cDNA, clone:Y1G0137E03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK185036 - Mus musculus cDNA, clone:Y0G0132G05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK192164 - Mus musculus cDNA, clone:Y1G0108B02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK192852 - Mus musculus cDNA, clone:Y1G0110C13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK194164 - Mus musculus cDNA, clone:Y1G0114H22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK196657 - Mus musculus cDNA, clone:Y1G0122I03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK197911 - Mus musculus cDNA, clone:Y1G0126I17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK200198 - Mus musculus cDNA, clone:Y1G0133L24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK203382 - Mus musculus cDNA, clone:Y1G0144L05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000022087, based on BLAT search.
AK215620 - Mus musculus cDNA, clone:Y2G0135K04, strand:unspecified.
AK211038 - Mus musculus cDNA, clone:Y2G0120H05, strand:unspecified.
AK210798 - Mus musculus cDNA, clone:Y2G0119K05, strand:unspecified.
AK008568 - Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010313A05 product:DNA segment, Chr 13, Wayne State University 123, expressed, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A0PJD6, D13Wsu123e, Misu, NM_145354, NSUN2_MOUSE, Q1HFZ0, Q3U972, Q8BPG9, Q8CDF9, Q91YX9, uc007rcm.1, uc007rcm.2, uc007rcm.3, uc007rcm.4, uc007rcm.5
UCSC ID: uc007rcm.5
RefSeq Accession: NM_145354
Protein: Q1HFZ0 (aka NSUN2_MOUSE)
CCDS: CCDS36722.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.