Mouse Gene Rnf139 (ENSMUST00000036904.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus ring finger protein 139 (Rnf139), mRNA. (from RefSeq NM_175226)
Gencode Transcript: ENSMUST00000036904.6
Gencode Gene: ENSMUSG00000037075.7
Transcript (Including UTRs)
   Position: mm10 chr15:58,889,229-58,902,390 Size: 13,162 Total Exon Count: 2 Strand: +
Coding Region
   Position: mm10 chr15:58,889,314-58,900,134 Size: 10,821 Coding Exon Count: 2 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:58,889,229-58,902,390)mRNA (may differ from genome)Protein (668 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.1085-0.495 Picture PostScript Text
3' UTR -614.802256-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsemblEnsembl  
 Protein Sequence Protein Sequence  
 Alignment Alignment  

-  Descriptions from all associated GenBank mRNAs
  AK029069 - Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732488J01 product:PATCHED RELATED PROTEIN TRANSLOCATED IN RENAL CANCER homolog [Homo sapiens], full insert sequence.
AK028400 - Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830432K05 product:MULTIPLE MEMBRANE SPANNING RECEPTOR TRC8 (PATCHED RELATED PROTEIN TRC8) homolog [Homo sapiens], full insert sequence.
BC052901 - Mus musculus ring finger protein 139, mRNA (cDNA clone MGC:60714 IMAGE:30070643), complete cds.
AK033506 - Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030408N09 product:PATCHED RELATED PROTEIN TRANSLOCATED IN RENAL CANCER homolog [Homo sapiens], full insert sequence.
AK171807 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830012B13 product:unclassifiable, full insert sequence.
AK213795 - Mus musculus cDNA, clone:Y2G0129I15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000036904, based on BLAT search.
AK016137 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930555P18 product:RIKEN cDNA 4930555P18 gene, full insert sequence.
DQ552298 - Mus musculus piRNA piR-2410, complete sequence.
DQ698663 - Mus musculus piRNA piR-113985, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J0K8, NM_175226, uc007vtq.1, uc007vtq.2
UCSC ID: uc007vtq.2
RefSeq Accession: NM_175226
CCDS: CCDS27494.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.