Mouse Gene Zc3h3 (ENSMUST00000100538.3) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus zinc finger CCCH type containing 3 (Zc3h3), mRNA. (from RefSeq NM_172121)
Gencode Transcript: ENSMUST00000100538.3
Gencode Gene: ENSMUSG00000075600.3
Transcript (Including UTRs)
Position: mm10 chr15:75,754,430-75,841,915 Size: 87,486 Total Exon Count: 12 Strand: -
Coding Region
Position: mm10 chr15:75,754,919-75,841,895 Size: 86,977 Coding Exon Count: 12
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: ZC3H3_MOUSE
DESCRIPTION: RecName: Full=Zinc finger CCCH domain-containing protein 3;
SIMILARITY: Contains 5 C3H1-type zinc fingers.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR000571 - Znf_CCCH
Pfam Domains: PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SCOP Domains: 90229 - CCCH zinc finger
ModBase Predicted Comparative 3D Structure on Q8CHP0
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC049953 - Mus musculus zinc finger CCCH type containing 3, mRNA (cDNA clone IMAGE:4167443), partial cds.AK138281 - Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230054N07 product:hypothetical Zn-finger, C-x8-C-x5-C-x3-H type/Serine-rich region profile containing protein, full insert sequence.BC038813 - Mus musculus zinc finger CCCH type containing 3, mRNA (cDNA clone IMAGE:4235754), containing frame-shift errors.BC060682 - Mus musculus zinc finger CCCH type containing 3, mRNA (cDNA clone MGC:66637 IMAGE:6416246), complete cds.AJ516034 - Mus musculus mRNA for hypothetical KIAA0150 protein.BC111448 - Mus musculus zinc finger CCCH type containing 3, mRNA (cDNA clone IMAGE:40060804), complete cds.AK191611 - Mus musculus cDNA, clone:Y1G0106G16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069044, based on BLAT search.AK086799 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030001L16 product:hypothetical protein, full insert sequence.AK191878 - Mus musculus cDNA, clone:Y1G0107D19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069044, based on BLAT search.AK186212 - Mus musculus cDNA, clone:Y0G0136K03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000038809, based on BLAT search.AK193148 - Mus musculus cDNA, clone:Y1G0111D18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069044, based on BLAT search.AK205610 - Mus musculus cDNA, clone:Y2G0102E03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069044, based on BLAT search.AK210610 - Mus musculus cDNA, clone:Y2G0119A02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069044, based on BLAT search.
Other Names for This Gene
Alternate Gene Symbols: Kiaa0150, NM_172121, Q80X78, Q8CHP0, uc007whf.1, uc007whf.2, ZC3H3_MOUSE, Zc3hdc3, Zfp623UCSC ID: uc007whf.2RefSeq Accession: NM_172121
Protein: Q8CHP0
(aka ZC3H3_MOUSE)
CCDS: CCDS27550.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.