Mouse Gene Bop1 (ENSMUST00000023217.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus block of proliferation 1 (Bop1), mRNA. (from RefSeq NM_013481)
Gencode Transcript: ENSMUST00000023217.10
Gencode Gene: ENSMUSG00000022557.11
Transcript (Including UTRs)
Position: mm10 chr15:76,452,989-76,477,277 Size: 24,289 Total Exon Count: 16 Strand: -
Coding Region
Position: mm10 chr15:76,453,225-76,477,221 Size: 23,997 Coding Exon Count: 16
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: BOP1_MOUSE
DESCRIPTION: RecName: Full=Ribosome biogenesis protein BOP1; AltName: Full=Block of proliferation 1 protein;
FUNCTION: Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.SUBUNIT: Component of the PeBoW complex, composed of BOP1, PES1 and WDR12. Within the PeBoW complex BOP1 interacts directly with PES1 and WDR12. The PeBoW complex also associates with the 66S pre-ribosome.SUBCELLULAR LOCATION: Nucleus, nucleolus. Nucleus, nucleoplasm.TISSUE SPECIFICITY: Expressed in brain, gut, heart, kidney, liver, lung, muscle, ovary, skin, spleen and testis.INDUCTION: Expression in quiescent fibroblasts is induced by serum stimulation.SIMILARITY: Belongs to the WD repeat BOP1/ERB1 family.SIMILARITY: Contains 7 WD repeats.SEQUENCE CAUTION: Sequence=BAC97868.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR012953 - BOP1_N_dom
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom
Pfam Domains: PF00400 - WD domain, G-beta repeat
PF08145 - BOP1NT (NUC169) domain
SCOP Domains: 50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like
ModBase Predicted Comparative 3D Structure on P97452
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK194272 - Mus musculus cDNA, clone:Y1G0114M20, strand:unspecified.AK190269 - Mus musculus cDNA, clone:Y1G0102E02, strand:unspecified.AK199218 - Mus musculus cDNA, clone:Y1G0130I10, strand:unspecified.AK168127 - Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730059I18 product:block of proliferation 1, full insert sequence.AK144095 - Mus musculus CRL-1751 WEHI 164 cDNA, RIKEN full-length enriched library, clone:G430004A08 product:block of proliferation 1, full insert sequence.AK187459 - Mus musculus cDNA, clone:Y0G0141O14, strand:unspecified.AK191694 - Mus musculus cDNA, clone:Y1G0106K21, strand:unspecified.BC012693 - Mus musculus block of proliferation 1, mRNA (cDNA clone MGC:13949 IMAGE:4193123), complete cds.AK129058 - Mus musculus mRNA for mKIAA0124 protein.U77415 - Mus musculus Bop1 mRNA, complete cds.AK199109 - Mus musculus cDNA, clone:Y1G0130D04, strand:unspecified.AK079627 - Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330083B15 product:block of proliferation 1, full insert sequence.AK167110 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0031I02 product:block of proliferation 1, full insert sequence.AK167878 - Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730035B22 product:block of proliferation 1, full insert sequence.AK206049 - Mus musculus cDNA, clone:Y2G0103J19, strand:unspecified.AK198058 - Mus musculus cDNA, clone:Y1G0127A03, strand:unspecified.AK149725 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530013F14 product:Warning: possibly chimeric clone, full insert sequence.AK167829 - Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730031N16 product:block of proliferation 1, full insert sequence.AK167225 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0042F07 product:block of proliferation 1, full insert sequence.AK191936 - Mus musculus cDNA, clone:Y1G0107G06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK203061 - Mus musculus cDNA, clone:Y1G0143K11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK199244 - Mus musculus cDNA, clone:Y1G0130J18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK178909 - Mus musculus cDNA, clone:Y0G0108F19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK187975 - Mus musculus cDNA, clone:Y0G0143K20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK184320 - Mus musculus cDNA, clone:Y0G0129H21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK190367 - Mus musculus cDNA, clone:Y1G0102I15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK191522 - Mus musculus cDNA, clone:Y1G0106C15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK177135 - Mus musculus cDNA, clone:Y0G0101L13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK177611 - Mus musculus cDNA, clone:Y0G0103G12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK180935 - Mus musculus cDNA, clone:Y0G0116G04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK185180 - Mus musculus cDNA, clone:Y0G0132N24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK188306 - Mus musculus cDNA, clone:Y0G0144L18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK185945 - Mus musculus cDNA, clone:Y0G0135M03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK194810 - Mus musculus cDNA, clone:Y1G0116I03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK217116 - Mus musculus cDNA, clone:Y2G0140L07, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK209200 - Mus musculus cDNA, clone:Y2G0114F01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK213349 - Mus musculus cDNA, clone:Y2G0128B04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK215153 - Mus musculus cDNA, clone:Y2G0134C10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK205317 - Mus musculus cDNA, clone:Y2G0101F05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK183760 - Mus musculus cDNA, clone:Y0G0127B02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK178937 - Mus musculus cDNA, clone:Y0G0108H04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK187881 - Mus musculus cDNA, clone:Y0G0143F18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK199312 - Mus musculus cDNA, clone:Y1G0130M18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK206410 - Mus musculus cDNA, clone:Y2G0104M05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK180635 - Mus musculus cDNA, clone:Y0G0115D20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK181923 - Mus musculus cDNA, clone:Y0G0120B22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK201242 - Mus musculus cDNA, clone:Y1G0137I24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023217, based on BLAT search.AK012448 - Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700056O10 product:unclassifiable, full insert sequence.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: BOP1_MOUSE, Kiaa0124, NM_013481, P97452, Q3TK87, Q6ZQI9, Q91X31, uc007wkf.1, uc007wkf.2UCSC ID: uc007wkf.2RefSeq Accession: NM_013481
Protein: P97452
(aka BOP1_MOUSE)
CCDS: CCDS27570.1
Gene Model Information
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.