Mouse Gene Card10 (ENSMUST00000170584.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Activates NF-kappa-B via BCL10 and IKK. (from UniProt P58660)
Gencode Transcript: ENSMUST00000170584.1
Gencode Gene: ENSMUSG00000033170.14
Transcript (Including UTRs)
   Position: mm10 chr15:78,776,493-78,802,669 Size: 26,177 Total Exon Count: 20 Strand: -
Coding Region
   Position: mm10 chr15:78,776,593-78,802,615 Size: 26,023 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:78,776,493-78,802,669)mRNA (may differ from genome)Protein (1021 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGeneCardsMGIPubMedSOURCE
UniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: CAR10_MOUSE
DESCRIPTION: RecName: Full=Caspase recruitment domain-containing protein 10; AltName: Full=Bcl10-interacting MAGUK protein 1; Short=Bimp1;
FUNCTION: Activates NF-kappa-B via BCL10 and IKK.
SUBUNIT: CARD10 and BCL10 bind to each other by CARD-CARD interaction. They both participate in a complex with MALT1, where MALT1 binds to BCL10.
TISSUE SPECIFICITY: Highly expressed in kidney, heart followed by brain, lung, liver, skeletal muscle and testis.
SIMILARITY: Contains 1 CARD domain.
CAUTION: Supposed to contain a SH3, a PDZ and a guanylate kinase- like domain. But none of these 3 domains are detected by PROSITE, Pfam or SMART.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D000082 Acetaminophen
  • C016403 2,4-dinitrotoluene
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D016604 Aflatoxin B1
  • D001151 Arsenic
  • D001564 Benzo(a)pyrene
  • D020111 Chlorodiphenyl (54% Chlorine)
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.8054-0.496 Picture PostScript Text
3' UTR -27.50100-0.275 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001315 - CARD
IPR011029 - DEATH-like

Pfam Domains:
PF00619 - Caspase recruitment domain

SCOP Domains:
47986 - DEATH domain
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on P58660
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007250 activation of NF-kappaB-inducing kinase activity
GO:0042981 regulation of apoptotic process
GO:0090051 negative regulation of cell migration involved in sprouting angiogenesis
GO:1900182 positive regulation of protein localization to nucleus

Cellular Component:
GO:0005622 intracellular


-  Descriptions from all associated GenBank mRNAs
  LF200357 - JP 2014500723-A/7860: Polycomb-Associated Non-Coding RNAs.
AF363456 - Mus musculus BIMP1 (Bimp1) mRNA, complete cds.
BC060203 - Mus musculus caspase recruitment domain family, member 10, mRNA (cDNA clone MGC:73485 IMAGE:6855024), complete cds.
AK079433 - Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930017C23 product:CASPASE RECRUITMENT DOMAIN PROTEIN 10 (BCL10-INTERACTING MAGUK PROTEIN 1) (BIMP1) homolog [Mus musculus], full insert sequence.
LF245094 - JP 2014500723-A/52597: Polycomb-Associated Non-Coding RNAs.
LF245095 - JP 2014500723-A/52598: Polycomb-Associated Non-Coding RNAs.
LF203247 - JP 2014500723-A/10750: Polycomb-Associated Non-Coding RNAs.
LF204035 - JP 2014500723-A/11538: Polycomb-Associated Non-Coding RNAs.
MA435934 - JP 2018138019-A/7860: Polycomb-Associated Non-Coding RNAs.
MA480671 - JP 2018138019-A/52597: Polycomb-Associated Non-Coding RNAs.
MA480672 - JP 2018138019-A/52598: Polycomb-Associated Non-Coding RNAs.
MA438824 - JP 2018138019-A/10750: Polycomb-Associated Non-Coding RNAs.
MA439612 - JP 2018138019-A/11538: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AF363456, Bimp1, CAR10_MOUSE, P58660, uc007wrj.1, uc007wrj.2
UCSC ID: uc007wrj.2
RefSeq Accession: NM_130859
Protein: P58660 (aka CAR10_MOUSE or CARA_MOUSE)
CCDS: CCDS27623.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.