Mouse Gene Tuba1c (ENSMUST00000058914.9) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus tubulin, alpha 1C (Tuba1c), mRNA. (from RefSeq NM_009448)
Gencode Transcript: ENSMUST00000058914.9
Gencode Gene: ENSMUSG00000043091.9
Transcript (Including UTRs)
Position: mm10 chr15:99,029,891-99,038,110 Size: 8,220 Total Exon Count: 4 Strand: +
Coding Region
Position: mm10 chr15:99,030,422-99,038,009 Size: 7,588 Coding Exon Count: 4
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q52L87_MOUSE
DESCRIPTION: SubName: Full=Tubulin, alpha 1C;
FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity).SUBUNIT: Dimer of alpha and beta chains (By similarity).SIMILARITY: Belongs to the tubulin family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR002452 - Alpha_tubulin
IPR008280 - Tub_FtsZ_C
IPR000217 - Tubulin
IPR018316 - Tubulin/FtsZ_2-layer-sand-dom
IPR023123 - Tubulin_C
IPR017975 - Tubulin_CS
IPR003008 - Tubulin_FtsZ_GTPase
Pfam Domains: PF00091 - Tubulin/FtsZ family, GTPase domain
PF03953 - Tubulin C-terminal domain
SCOP Domains: 52490 - Tubulin nucleotide-binding domain-like
53474 - alpha/beta-Hydrolases
55307 - Tubulin C-terminal domain-like
ModBase Predicted Comparative 3D Structure on Q52L87
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC094022 - Mus musculus tubulin, alpha 1C, mRNA (cDNA clone MGC:103284 IMAGE:4162287), complete cds.AK145567 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0015P17 product:tubulin, alpha 6, full insert sequence.AK167654 - Mus musculus 14 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I530027E06 product:tubulin, alpha 6, full insert sequence.BC004745 - Mus musculus tubulin, alpha 1C, mRNA (cDNA clone MGC:6150 IMAGE:3583832), complete cds.BC022182 - Mus musculus tubulin, alpha 1C, mRNA (cDNA clone MGC:14067 IMAGE:3661220), complete cds.AK167759 - Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730007C23 product:tubulin, alpha 6, full insert sequence.BC026753 - Mus musculus tubulin, alpha 1C, mRNA (cDNA clone MGC:30244 IMAGE:5124686), complete cds.M13441 - Mouse alpha-tubulin isotype M-alpha-6 mRNA, complete cds.AK217320 - Mus musculus cDNA, clone:Y2G0141G10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000063628, based on BLAT search.AK219610 - Mus musculus cDNA, clone:Y2G0149A03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK199651 - Mus musculus cDNA, clone:Y1G0131P10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.U89398 - Mus musculus strain BALB/c alpha-tubulin mRNA, partial cds.AB345661 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA10862, complete sequence.AK183185 - Mus musculus cDNA, clone:Y0G0125A03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AB345667 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA10868, complete sequence.AK194490 - Mus musculus cDNA, clone:Y1G0115H19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039800, based on BLAT search.AK013029 - Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810407E13 product:tubulin alpha 6, full insert sequence.AK182649 - Mus musculus cDNA, clone:Y0G0123E21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK218261 - Mus musculus cDNA, clone:Y2G0144J02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK210120 - Mus musculus cDNA, clone:Y2G0117G09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK188831 - Mus musculus cDNA, clone:Y0G0146J23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK197049 - Mus musculus cDNA, clone:Y1G0123N06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK212976 - Mus musculus cDNA, clone:Y2G0126L18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK193296 - Mus musculus cDNA, clone:Y1G0111M03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK194797 - Mus musculus cDNA, clone:Y1G0116H12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK202573 - Mus musculus cDNA, clone:Y1G0142A12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK202495 - Mus musculus cDNA, clone:Y1G0141L08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK203182 - Mus musculus cDNA, clone:Y1G0144B02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK195795 - Mus musculus cDNA, clone:Y1G0119K12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039800, based on BLAT search.AK192326 - Mus musculus cDNA, clone:Y1G0108I18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.AK196733 - Mus musculus cDNA, clone:Y1G0122M06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039800, based on BLAT search.AK191962 - Mus musculus cDNA, clone:Y1G0107H11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000058914, based on BLAT search.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu04145 - Phagosomemmu04540 - Gap junction
BioCarta from NCI Cancer Genome Anatomy Project m_mta3Pathway - Downregulated of MTA-3 in ER-negative Breast Tumors
Other Names for This Gene
Alternate Gene Symbols: NM_009448, Q52L87, Q52L87_MOUSE, Tuba6, uc007xom.1, uc007xom.2UCSC ID: uc007xom.2RefSeq Accession: NM_009448
Protein: Q52L87
CCDS: CCDS37198.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.